Andreatta M - Search Results

1

IL-10-expressing CAR T cells resist dysfunction and mediate durable clearance of solid tumors and metastases.

Zhao Y, Chen J, Andreatta M, Feng B, Xie YQ, Wenes M, Wang Y, Gao M, Hu X, Romero P, Carmona S, Sun J, Guo Y, Tang L. Zhao Y, et al. Among authors: andreatta m. Nat Biotechnol. 2024 Jan 2. doi: 10.1038/s41587-023-02060-8. Online ahead of print. Nat Biotechnol. 2024. PMID: 38168996

2

NNAlign_MA; MHC Peptidome Deconvolution for Accurate MHC Binding Motif Characterization and Improved T-cell Epitope Predictions.

Alvarez B, Reynisson B, Barra C, Buus S, Ternette N, Connelley T, Andreatta M, Nielsen M. Alvarez B, et al. Among authors: andreatta m. Mol Cell Proteomics. 2019 Dec;18(12):2459-2477. doi: 10.1074/mcp.TIR119.001658. Epub 2019 Oct 2. Mol Cell Proteomics. 2019. PMID: 31578220 Free PMC article.

3

NNAlign: a web-based prediction method allowing non-expert end-user discovery of sequence motifs in quantitative peptide data.

Andreatta M, Schafer-Nielsen C, Lund O, Buus S, Nielsen M. Andreatta M, et al. PLoS One. 2011;6(11):e26781. doi: 10.1371/journal.pone.0026781. Epub 2011 Nov 2. PLoS One. 2011. PMID: 22073191 Free PMC article.

4

Characterizing the binding motifs of 11 common human HLA-DP and HLA-DQ molecules using NNAlign.

Andreatta M, Nielsen M. Andreatta M, et al. Immunology. 2012 Jul;136(3):306-11. doi: 10.1111/j.1365-2567.2012.03579.x. Immunology. 2012. PMID: 22352343 Free PMC article.

5

In silico prediction of human pathogenicity in the γ-proteobacteria.

Andreatta M, Nielsen M, Møller Aarestrup F, Lund O. Andreatta M, et al. PLoS One. 2010 Oct 27;5(10):e13680. doi: 10.1371/journal.pone.0013680. PLoS One. 2010. PMID: 21048922 Free PMC article.

6

STACAS: Sub-Type Anchor Correction for Alignment in Seurat to integrate single-cell RNA-seq data.

Andreatta M, Carmona SJ. Andreatta M, et al. Bioinformatics. 2021 May 5;37(6):882-884. doi: 10.1093/bioinformatics/btaa755. Bioinformatics. 2021. PMID: 32845323 Free PMC article.

7

Interpretation of T cell states from single-cell transcriptomics data using reference atlases.

Andreatta M, Corria-Osorio J, Müller S, Cubas R, Coukos G, Carmona SJ. Andreatta M, et al. Nat Commun. 2021 May 20;12(1):2965. doi: 10.1038/s41467-021-23324-4. Nat Commun. 2021. PMID: 34017005 Free PMC article.

8

UCell: Robust and scalable single-cell gene signature scoring.

Andreatta M, Carmona SJ. Andreatta M, et al. Comput Struct Biotechnol J. 2021 Jun 30;19:3796-3798. doi: 10.1016/j.csbj.2021.06.043. eCollection 2021. Comput Struct Biotechnol J. 2021. PMID: 34285779 Free PMC article.

9

SPICA: Swiss portal for immune cell analysis.

Andreatta M, David FPA, Iseli C, Guex N, Carmona SJ. Andreatta M, et al. Nucleic Acids Res. 2022 Jan 7;50(D1):D1109-D1114. doi: 10.1093/nar/gkab1055. Nucleic Acids Res. 2022. PMID: 34747477 Free PMC article.

10

scGate: marker-based purification of cell types from heterogeneous single-cell RNA-seq datasets.

Andreatta M, Berenstein AJ, Carmona SJ. Andreatta M, et al. Bioinformatics. 2022 Apr 28;38(9):2642-2644. doi: 10.1093/bioinformatics/btac141. Bioinformatics. 2022. PMID: 35258562 Free PMC article.

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