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Genotype-free demultiplexing of pooled single-cell RNA-seq.
Xu J, Falconer C, Nguyen Q, Crawford J, McKinnon BD, Mortlock S, Senabouth A, Andersen S, Chiu HS, Jiang L, Palpant NJ, Yang J, Mueller MD, Hewitt AW, Pébay A, Montgomery GW, Powell JE, Coin LJM. Xu J, et al. Among authors: andersen s. Genome Biol. 2019 Dec 19;20(1):290. doi: 10.1186/s13059-019-1852-7. Genome Biol. 2019. PMID: 31856883 Free PMC article.
Genome-wide discovery of human splicing branchpoints.
Mercer TR, Clark MB, Andersen SB, Brunck ME, Haerty W, Crawford J, Taft RJ, Nielsen LK, Dinger ME, Mattick JS. Mercer TR, et al. Among authors: andersen sb. Genome Res. 2015 Feb;25(2):290-303. doi: 10.1101/gr.182899.114. Epub 2015 Jan 5. Genome Res. 2015. PMID: 25561518 Free PMC article.
Detection of HPV E7 Transcription at Single-Cell Resolution in Epidermis.
Lukowski SW, Tuong ZK, Noske K, Senabouth A, Nguyen QH, Andersen SB, Soyer HP, Frazer IH, Powell JE. Lukowski SW, et al. J Invest Dermatol. 2018 Dec;138(12):2558-2567. doi: 10.1016/j.jid.2018.06.169. Epub 2018 Jun 30. J Invest Dermatol. 2018. PMID: 29964033 Free article.
Single-Cell Profiling Identifies Key Pathways Expressed by iPSCs Cultured in Different Commercial Media.
Daniszewski M, Nguyen Q, Chy HS, Singh V, Crombie DE, Kulkarni T, Liang HH, Sivakumaran P, Lidgerwood GE, Hernández D, Conquest A, Rooney LA, Chevalier S, Andersen SB, Senabouth A, Vickers JC, Mackey DA, Craig JE, Laslett AL, Hewitt AW, Powell JE, Pébay A. Daniszewski M, et al. Among authors: andersen sb. iScience. 2018 Sep 28;7:30-39. doi: 10.1016/j.isci.2018.08.016. Epub 2018 Aug 23. iScience. 2018. PMID: 30267684 Free PMC article.
ascend: R package for analysis of single-cell RNA-seq data.
Senabouth A, Lukowski SW, Hernandez JA, Andersen SB, Mei X, Nguyen QH, Powell JE. Senabouth A, et al. Gigascience. 2019 Aug 1;8(8):giz087. doi: 10.1093/gigascience/giz087. Gigascience. 2019. PMID: 31505654 Free PMC article.
Comparative performance of the BGI and Illumina sequencing technology for single-cell RNA-sequencing.
Senabouth A, Andersen S, Shi Q, Shi L, Jiang F, Zhang W, Wing K, Daniszewski M, Lukowski SW, Hung SSC, Nguyen Q, Fink L, Beckhouse A, Pébay A, Hewitt AW, Powell JE. Senabouth A, et al. Among authors: andersen s. NAR Genom Bioinform. 2020 May 13;2(2):lqaa034. doi: 10.1093/nargab/lqaa034. eCollection 2020 Jun. NAR Genom Bioinform. 2020. PMID: 33575589 Free PMC article.
Single-cell eQTL mapping identifies cell type-specific genetic control of autoimmune disease.
Yazar S, Alquicira-Hernandez J, Wing K, Senabouth A, Gordon MG, Andersen S, Lu Q, Rowson A, Taylor TRP, Clarke L, Maccora K, Chen C, Cook AL, Ye CJ, Fairfax KA, Hewitt AW, Powell JE. Yazar S, et al. Among authors: andersen s. Science. 2022 Apr 8;376(6589):eabf3041. doi: 10.1126/science.abf3041. Epub 2022 Apr 8. Science. 2022. PMID: 35389779
Spatially Resolved Transcriptomes of Mammalian Kidneys Illustrate the Molecular Complexity and Interactions of Functional Nephron Segments.
Raghubar AM, Pham DT, Tan X, Grice LF, Crawford J, Lam PY, Andersen SB, Yoon S, Teoh SM, Matigian NA, Stewart A, Francis L, Ng MSY, Healy HG, Combes AN, Kassianos AJ, Nguyen Q, Mallett AJ. Raghubar AM, et al. Among authors: andersen sb. Front Med (Lausanne). 2022 Jul 7;9:873923. doi: 10.3389/fmed.2022.873923. eCollection 2022. Front Med (Lausanne). 2022. PMID: 35872784 Free PMC article.
2,172 results