Anders S - Search Results

1

Endothelial GATA4 controls liver fibrosis and regeneration by preventing a pathogenic switch in angiocrine signaling.

Winkler M, Staniczek T, Kürschner SW, Schmid CD, Schönhaber H, Cordero J, Kessler L, Mathes A, Sticht C, Neßling M, Uvarovskii A, Anders S, Zhang XJ, von Figura G, Hartmann D, Mogler C, Dobreva G, Schledzewski K, Géraud C, Koch PS, Goerdt S. Winkler M, et al. Among authors: anders s. J Hepatol. 2021 Feb;74(2):380-393. doi: 10.1016/j.jhep.2020.08.033. Epub 2020 Sep 9. J Hepatol. 2021. PMID: 32916216 Free article.

2

Dissecting intratumour heterogeneity of nodal B-cell lymphomas at the transcriptional, genetic and drug-response levels.

Roider T, Seufert J, Uvarovskii A, Frauhammer F, Bordas M, Abedpour N, Stolarczyk M, Mallm JP, Herbst SA, Bruch PM, Balke-Want H, Hundemer M, Rippe K, Goeppert B, Seiffert M, Brors B, Mechtersheimer G, Zenz T, Peifer M, Chapuy B, Schlesner M, Müller-Tidow C, Fröhling S, Huber W, Anders S, Dietrich S. Roider T, et al. Among authors: anders s. Nat Cell Biol. 2020 Jul;22(7):896-906. doi: 10.1038/s41556-020-0532-x. Epub 2020 Jun 15. Nat Cell Biol. 2020. PMID: 32541878

3

Lung endothelium exploits susceptible tumor cell states to instruct metastatic latency.

Jakab M, Lee KH, Uvarovskii A, Ovchinnikova S, Kulkarni SR, Jakab S, Rostalski T, Spegg C, Anders S, Augustin HG. Jakab M, et al. Among authors: anders s. Nat Cancer. 2024 Feb 2. doi: 10.1038/s43018-023-00716-7. Online ahead of print. Nat Cancer. 2024. PMID: 38308117

4

Count-based differential expression analysis of RNA sequencing data using R and Bioconductor.

Anders S, McCarthy DJ, Chen Y, Okoniewski M, Smyth GK, Huber W, Robinson MD. Anders S, et al. Nat Protoc. 2013 Sep;8(9):1765-86. doi: 10.1038/nprot.2013.099. Epub 2013 Aug 22. Nat Protoc. 2013. PMID: 23975260

5

An efficient method for genome-wide polyadenylation site mapping and RNA quantification.

Wilkening S, Pelechano V, Järvelin AI, Tekkedil MM, Anders S, Benes V, Steinmetz LM. Wilkening S, et al. Among authors: anders s. Nucleic Acids Res. 2013 Mar 1;41(5):e65. doi: 10.1093/nar/gks1249. Epub 2013 Jan 7. Nucleic Acids Res. 2013. PMID: 23295673 Free PMC article.

6

Exploring dimension-reduced embeddings with Sleepwalk.

Ovchinnikova S, Anders S. Ovchinnikova S, et al. Among authors: anders s. Genome Res. 2020 May;30(5):749-756. doi: 10.1101/gr.251447.119. Epub 2020 May 19. Genome Res. 2020. PMID: 32430339 Free PMC article.

7

Differential expression analysis for sequence count data.

Anders S, Huber W. Anders S, et al. Genome Biol. 2010;11(10):R106. doi: 10.1186/gb-2010-11-10-r106. Epub 2010 Oct 27. Genome Biol. 2010. PMID: 20979621 Free PMC article.

8

Accounting for technical noise in single-cell RNA-seq experiments.

Brennecke P, Anders S, Kim JK, Kołodziejczyk AA, Zhang X, Proserpio V, Baying B, Benes V, Teichmann SA, Marioni JC, Heisler MG. Brennecke P, et al. Among authors: anders s. Nat Methods. 2013 Nov;10(11):1093-5. doi: 10.1038/nmeth.2645. Epub 2013 Sep 22. Nat Methods. 2013. PMID: 24056876

9

Relating CNVs to transcriptome data at fine resolution: assessment of the effect of variant size, type, and overlap with functional regions.

Schlattl A, Anders S, Waszak SM, Huber W, Korbel JO. Schlattl A, et al. Among authors: anders s. Genome Res. 2011 Dec;21(12):2004-13. doi: 10.1101/gr.122614.111. Epub 2011 Aug 23. Genome Res. 2011. PMID: 21862627 Free PMC article.

10

Detecting differential usage of exons from RNA-seq data.

Anders S, Reyes A, Huber W. Anders S, et al. Genome Res. 2012 Oct;22(10):2008-17. doi: 10.1101/gr.133744.111. Epub 2012 Jun 21. Genome Res. 2012. PMID: 22722343 Free PMC article.

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