Amati B - Search Results

1

FunChIP: an R/Bioconductor package for functional classification of ChIP-seq shapes.

Parodi ACL, Sangalli LM, Vantini S, Amati B, Secchi P, Morelli MJ. Parodi ACL, et al. Among authors: amati b. Bioinformatics. 2017 Aug 15;33(16):2570-2572. doi: 10.1093/bioinformatics/btx201. Bioinformatics. 2017. PMID: 28398543

2

Selective transcriptional regulation by Myc in cellular growth control and lymphomagenesis.

Sabò A, Kress TR, Pelizzola M, de Pretis S, Gorski MM, Tesi A, Morelli MJ, Bora P, Doni M, Verrecchia A, Tonelli C, Fagà G, Bianchi V, Ronchi A, Low D, Müller H, Guccione E, Campaner S, Amati B. Sabò A, et al. Among authors: amati b. Nature. 2014 Jul 24;511(7510):488-492. doi: 10.1038/nature13537. Epub 2014 Jul 9. Nature. 2014. PMID: 25043028 Free PMC article.

3

INSPEcT: a computational tool to infer mRNA synthesis, processing and degradation dynamics from RNA- and 4sU-seq time course experiments.

de Pretis S, Kress T, Morelli MJ, Melloni GE, Riva L, Amati B, Pelizzola M. de Pretis S, et al. Among authors: amati b. Bioinformatics. 2015 Sep 1;31(17):2829-35. doi: 10.1093/bioinformatics/btv288. Epub 2015 May 7. Bioinformatics. 2015. PMID: 25957348

4

Selective transcriptional regulation by Myc: Experimental design and computational analysis of high-throughput sequencing data.

Pelizzola M, Morelli MJ, Sabò A, Kress TR, de Pretis S, Amati B. Pelizzola M, et al. Among authors: amati b. Data Brief. 2015 Feb 12;3:40-6. doi: 10.1016/j.dib.2015.02.003. eCollection 2015 Jun. Data Brief. 2015. PMID: 26217715 Free PMC article.

5

Genome-wide analysis of p53 transcriptional programs in B cells upon exposure to genotoxic stress in vivo.

Tonelli C, Morelli MJ, Bianchi S, Rotta L, Capra T, Sabò A, Campaner S, Amati B. Tonelli C, et al. Among authors: amati b. Oncotarget. 2015 Sep 22;6(28):24611-26. doi: 10.18632/oncotarget.5232. Oncotarget. 2015. PMID: 26372730 Free PMC article.

6

methylPipe and compEpiTools: a suite of R packages for the integrative analysis of epigenomics data.

Kishore K, de Pretis S, Lister R, Morelli MJ, Bianchi V, Amati B, Ecker JR, Pelizzola M. Kishore K, et al. Among authors: amati b. BMC Bioinformatics. 2015 Sep 29;16:313. doi: 10.1186/s12859-015-0742-6. BMC Bioinformatics. 2015. PMID: 26415965 Free PMC article.

7

Pin1 is required for sustained B cell proliferation upon oncogenic activation of Myc.

D'Artista L, Bisso A, Piontini A, Doni M, Verrecchia A, Kress TR, Morelli MJ, Del Sal G, Amati B, Campaner S. D'Artista L, et al. Among authors: amati b. Oncotarget. 2016 Apr 19;7(16):21786-98. doi: 10.18632/oncotarget.7846. Oncotarget. 2016. PMID: 26943576 Free PMC article.

8

p53 transcriptional programs in B cells upon exposure to genotoxic stress in vivo: Computational analysis of next-generation sequencing data.

Tonelli C, Amati B, Morelli MJ. Tonelli C, et al. Among authors: amati b. Genom Data. 2015 Nov 7;7:29-31. doi: 10.1016/j.gdata.2015.11.006. eCollection 2016 Mar. Genom Data. 2015. PMID: 26981355 Free PMC article.

9

Integrated Systems for NGS Data Management and Analysis: Open Issues and Available Solutions.

Bianchi V, Ceol A, Ogier AG, de Pretis S, Galeota E, Kishore K, Bora P, Croci O, Campaner S, Amati B, Morelli MJ, Pelizzola M. Bianchi V, et al. Among authors: amati b. Front Genet. 2016 May 6;7:75. doi: 10.3389/fgene.2016.00075. eCollection 2016. Front Genet. 2016. PMID: 27200084 Free PMC article.

10

Proteasome machinery is instrumental in a common gain-of-function program of the p53 missense mutants in cancer.

Walerych D, Lisek K, Sommaggio R, Piazza S, Ciani Y, Dalla E, Rajkowska K, Gaweda-Walerych K, Ingallina E, Tonelli C, Morelli MJ, Amato A, Eterno V, Zambelli A, Rosato A, Amati B, Wiśniewski JR, Del Sal G. Walerych D, et al. Among authors: amati b. Nat Cell Biol. 2016 Aug;18(8):897-909. doi: 10.1038/ncb3380. Epub 2016 Jun 27. Nat Cell Biol. 2016. PMID: 27347849 Free article.

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