Aluru S - Search Results

1

A comprehensive evaluation of long read error correction methods.

Zhang H, Jain C, Aluru S. Zhang H, et al. Among authors: aluru s. BMC Genomics. 2020 Dec 21;21(Suppl 6):889. doi: 10.1186/s12864-020-07227-0. BMC Genomics. 2020. PMID: 33349243 Free PMC article. Review.

2

Reptile: representative tiling for short read error correction.

Yang X, Dorman KS, Aluru S. Yang X, et al. Among authors: aluru s. Bioinformatics. 2010 Oct 15;26(20):2526-33. doi: 10.1093/bioinformatics/btq468. Epub 2010 Aug 16. Bioinformatics. 2010. PMID: 20834037

3

Repeat-aware modeling and correction of short read errors.

Yang X, Aluru S, Dorman KS. Yang X, et al. Among authors: aluru s. BMC Bioinformatics. 2011 Feb 15;12 Suppl 1(Suppl 1):S52. doi: 10.1186/1471-2105-12-S1-S52. BMC Bioinformatics. 2011. PMID: 21342585 Free PMC article.

4

SNVSniffer: an integrated caller for germline and somatic single-nucleotide and indel mutations.

Liu Y, Loewer M, Aluru S, Schmidt B. Liu Y, et al. Among authors: aluru s. BMC Syst Biol. 2016 Aug 1;10 Suppl 2(Suppl 2):47. doi: 10.1186/s12918-016-0300-5. BMC Syst Biol. 2016. PMID: 27489955 Free PMC article.

5

Efficient detection of viral transmissions with Next-Generation Sequencing data.

Rytsareva I, Campo DS, Zheng Y, Sims S, Thankachan SV, Tetik C, Chirag J, Chockalingam SP, Sue A, Aluru S, Khudyakov Y. Rytsareva I, et al. Among authors: aluru s. BMC Genomics. 2017 May 24;18(Suppl 4):372. doi: 10.1186/s12864-017-3732-4. BMC Genomics. 2017. PMID: 28589864 Free PMC article.

6

A greedy alignment-free distance estimator for phylogenetic inference.

Thankachan SV, Chockalingam SP, Liu Y, Krishnan A, Aluru S. Thankachan SV, et al. Among authors: aluru s. BMC Bioinformatics. 2017 Jun 7;18(Suppl 8):238. doi: 10.1186/s12859-017-1658-0. BMC Bioinformatics. 2017. PMID: 28617225 Free PMC article.

7

Kmerind: A Flexible Parallel Library for K-mer Indexing of Biological Sequences on Distributed Memory Systems.

Pan T, Flick P, Jain C, Liu Y, Aluru S. Pan T, et al. Among authors: aluru s. IEEE/ACM Trans Comput Biol Bioinform. 2019 Jul-Aug;16(4):1117-1131. doi: 10.1109/TCBB.2017.2760829. Epub 2017 Oct 9. IEEE/ACM Trans Comput Biol Bioinform. 2019. PMID: 28991750

8

A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases.

Jain C, Dilthey A, Koren S, Aluru S, Phillippy AM. Jain C, et al. Among authors: aluru s. J Comput Biol. 2018 Jul;25(7):766-779. doi: 10.1089/cmb.2018.0036. Epub 2018 Apr 30. J Comput Biol. 2018. PMID: 29708767 Free PMC article.

9

A fast adaptive algorithm for computing whole-genome homology maps.

Jain C, Koren S, Dilthey A, Phillippy AM, Aluru S. Jain C, et al. Among authors: aluru s. Bioinformatics. 2018 Sep 1;34(17):i748-i756. doi: 10.1093/bioinformatics/bty597. Bioinformatics. 2018. PMID: 30423094 Free PMC article.

10

High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries.

Jain C, Rodriguez-R LM, Phillippy AM, Konstantinidis KT, Aluru S. Jain C, et al. Among authors: aluru s. Nat Commun. 2018 Nov 30;9(1):5114. doi: 10.1038/s41467-018-07641-9. Nat Commun. 2018. PMID: 30504855 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

60 results

Search Page