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Co-evolution and Co-speciation of Host-Gut Bacteria Systems.
Groussin M, Mazel F, Alm EJ. Groussin M, et al. Among authors: alm ej. Cell Host Microbe. 2020 Jul 8;28(1):12-22. doi: 10.1016/j.chom.2020.06.013. Cell Host Microbe. 2020. PMID: 32645351 Free article. Review.
Sympatric speciation: when is it possible in bacteria?
Friedman J, Alm EJ, Shapiro BJ. Friedman J, et al. Among authors: alm ej. PLoS One. 2013;8(1):e53539. doi: 10.1371/journal.pone.0053539. Epub 2013 Jan 17. PLoS One. 2013. PMID: 23349716 Free PMC article.
Two dynamic regimes in the human gut microbiome.
Gibbons SM, Kearney SM, Smillie CS, Alm EJ. Gibbons SM, et al. Among authors: alm ej. PLoS Comput Biol. 2017 Feb 21;13(2):e1005364. doi: 10.1371/journal.pcbi.1005364. eCollection 2017 Feb. PLoS Comput Biol. 2017. PMID: 28222117 Free PMC article.
Strain Tracking Reveals the Determinants of Bacterial Engraftment in the Human Gut Following Fecal Microbiota Transplantation.
Smillie CS, Sauk J, Gevers D, Friedman J, Sung J, Youngster I, Hohmann EL, Staley C, Khoruts A, Sadowsky MJ, Allegretti JR, Smith MB, Xavier RJ, Alm EJ. Smillie CS, et al. Among authors: alm ej. Cell Host Microbe. 2018 Feb 14;23(2):229-240.e5. doi: 10.1016/j.chom.2018.01.003. Cell Host Microbe. 2018. PMID: 29447696 Free PMC article.
Adaptive Evolution within Gut Microbiomes of Healthy People.
Zhao S, Lieberman TD, Poyet M, Kauffman KM, Gibbons SM, Groussin M, Xavier RJ, Alm EJ. Zhao S, et al. Among authors: alm ej. Cell Host Microbe. 2019 May 8;25(5):656-667.e8. doi: 10.1016/j.chom.2019.03.007. Epub 2019 Apr 23. Cell Host Microbe. 2019. PMID: 31028005 Free PMC article.
A library of human gut bacterial isolates paired with longitudinal multiomics data enables mechanistic microbiome research.
Poyet M, Groussin M, Gibbons SM, Avila-Pacheco J, Jiang X, Kearney SM, Perrotta AR, Berdy B, Zhao S, Lieberman TD, Swanson PK, Smith M, Roesemann S, Alexander JE, Rich SA, Livny J, Vlamakis H, Clish C, Bullock K, Deik A, Scott J, Pierce KA, Xavier RJ, Alm EJ. Poyet M, et al. Among authors: alm ej. Nat Med. 2019 Sep;25(9):1442-1452. doi: 10.1038/s41591-019-0559-3. Epub 2019 Sep 2. Nat Med. 2019. PMID: 31477907
Elevated rates of horizontal gene transfer in the industrialized human microbiome.
Groussin M, Poyet M, Sistiaga A, Kearney SM, Moniz K, Noel M, Hooker J, Gibbons SM, Segurel L, Froment A, Mohamed RS, Fezeu A, Juimo VA, Lafosse S, Tabe FE, Girard C, Iqaluk D, Nguyen LTT, Shapiro BJ, Lehtimäki J, Ruokolainen L, Kettunen PP, Vatanen T, Sigwazi S, Mabulla A, Domínguez-Rodrigo M, Nartey YA, Agyei-Nkansah A, Duah A, Awuku YA, Valles KA, Asibey SO, Afihene MY, Roberts LR, Plymoth A, Onyekwere CA, Summons RE, Xavier RJ, Alm EJ. Groussin M, et al. Among authors: alm ej. Cell. 2021 Apr 15;184(8):2053-2067.e18. doi: 10.1016/j.cell.2021.02.052. Epub 2021 Mar 31. Cell. 2021. PMID: 33794144 Free article.
194 results