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Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics.
Muus C, Luecken MD, Eraslan G, Sikkema L, Waghray A, Heimberg G, Kobayashi Y, Vaishnav ED, Subramanian A, Smillie C, Jagadeesh KA, Duong ET, Fiskin E, Torlai Triglia E, Ansari M, Cai P, Lin B, Buchanan J, Chen S, Shu J, Haber AL, Chung H, Montoro DT, Adams T, Aliee H, Allon SJ, Andrusivova Z, Angelidis I, Ashenberg O, Bassler K, Bécavin C, Benhar I, Bergenstråhle J, Bergenstråhle L, Bolt L, Braun E, Bui LT, Callori S, Chaffin M, Chichelnitskiy E, Chiou J, Conlon TM, Cuoco MS, Cuomo ASE, Deprez M, Duclos G, Fine D, Fischer DS, Ghazanfar S, Gillich A, Giotti B, Gould J, Guo M, Gutierrez AJ, Habermann AC, Harvey T, He P, Hou X, Hu L, Hu Y, Jaiswal A, Ji L, Jiang P, Kapellos TS, Kuo CS, Larsson L, Leney-Greene MA, Lim K, Litviňuková M, Ludwig LS, Lukassen S, Luo W, Maatz H, Madissoon E, Mamanova L, Manakongtreecheep K, Leroy S, Mayr CH, Mbano IM, McAdams AM, Nabhan AN, Nyquist SK, Penland L, Poirion OB, Poli S, Qi C, Queen R, Reichart D, Rosas I, Schupp JC, Shea CV, Shi X, Sinha R, Sit RV, Slowikowski K, Slyper M, Smith NP, Sountoulidis A, Strunz M, Sullivan TB, Sun D, Talavera-López C, Tan P, Tantivit J, Travaglini KJ, Tucker NR, Vernon KA, Wadsworth MH, Waldman J, Wang X, Xu … See abstract for full author list ➔ Muus C, et al. Among authors: aliee h. Nat Med. 2021 Mar;27(3):546-559. doi: 10.1038/s41591-020-01227-z. Epub 2021 Mar 2. Nat Med. 2021. PMID: 33654293 Free PMC article.
Determinants of expression of SARS-CoV-2 entry-related genes in upper and lower airways.
Aliee H, Massip F, Qi C, Stella de Biase M, van Nijnatten J, Kersten ETG, Kermani NZ, Khuder B, Vonk JM, Vermeulen RCH; U-BIOPRED study group; Cambridge Lung Cancer Early Detection Programme; INER-Ciencias Mexican Lung Program; Neighbors M, Tew GW, Grimbaldeston MA, Ten Hacken NHT, Hu S, Guo Y, Zhang X, Sun K, Hiemstra PS, Ponder BA, Mäkelä MJ, Malmström K, Rintoul RC, Reyfman PA, Theis FJ, Brandsma CA, Adcock IM, Timens W, Xu CJ, van den Berge M, Schwarz RF, Koppelman GH, Nawijn MC, Faiz A. Aliee H, et al. Allergy. 2022 Feb;77(2):690-694. doi: 10.1111/all.15152. Epub 2021 Nov 3. Allergy. 2022. PMID: 34698405 Free PMC article. No abstract available.
Sfaira accelerates data and model reuse in single cell genomics.
Fischer DS, Dony L, König M, Moeed A, Zappia L, Heumos L, Tritschler S, Holmberg O, Aliee H, Theis FJ. Fischer DS, et al. Among authors: aliee h. Genome Biol. 2021 Aug 25;22(1):248. doi: 10.1186/s13059-021-02452-6. Genome Biol. 2021. PMID: 34433466 Free PMC article.
Comparison of genome-wide gene expression profiling by RNA Sequencing versus microarray in bronchial biopsies of COPD patients before and after inhaled corticosteroid treatment: does it provide new insights?
Ditz B, Boekhoudt JG, Aliee H, Theis FJ, Nawijn M, Brandsma CA, Hiemstra PS, Timens W, Tew GW, Grimbaldeston MA, Neighbors M, Guryev V, van den Berge M, Faiz A. Ditz B, et al. Among authors: aliee h. ERJ Open Res. 2021 Jun 21;7(2):00104-2021. doi: 10.1183/23120541.00104-2021. eCollection 2021 Apr. ERJ Open Res. 2021. PMID: 34164552 Free PMC article.
Determinants of SARS-CoV-2 receptor gene expression in upper and lower airways.
Aliee H, Massip F, Qi C, de Biase MS, van Nijnatten J, Kersten ETG, Kermani NZ, Khuder B, Vonk JM, Vermeulen RCH; U-BIOPRED study group; Cambridge Lung Cancer Early Detection Programme; INER-Ciencias Mexican Lung Program; NHLBI LungMAP Consortium; Neighbors M, Tew GW, Grimbaldeston M, Ten Hacken NHT, Hu S, Guo Y, Zhang X, Sun K, Hiemstra PS, Ponder BA, Mäkelä MJ, Malmström K, Rintoul RC, Reyfman PA, Theis FJ, Brandsma CA, Adcock IM, Timens W, Xu CJ, van den Berge M, Schwarz RF, Koppelman GH, Nawijn MC, Faiz A. Aliee H, et al. medRxiv [Preprint]. 2020 Sep 2:2020.08.31.20169946. doi: 10.1101/2020.08.31.20169946. medRxiv. 2020. PMID: 32909007 Free PMC article. Updated. Preprint.
Origin and function of activated fibroblast states during zebrafish heart regeneration.
Hu B, Lelek S, Spanjaard B, El-Sammak H, Simões MG, Mintcheva J, Aliee H, Schäfer R, Meyer AM, Theis F, Stainier DYR, Panáková D, Junker JP. Hu B, et al. Among authors: aliee h. Nat Genet. 2022 Aug;54(8):1227-1237. doi: 10.1038/s41588-022-01129-5. Epub 2022 Jul 21. Nat Genet. 2022. PMID: 35864193 Free PMC article.
16 results