Ali MA - Search Results

1

Restoration of KMT2C/MLL3 in human colorectal cancer cells reinforces genome-wide H3K4me1 profiles and influences cell growth and gene expression.

Larsson C, Cordeddu L, Siggens L, Pandzic T, Kundu S, He L, Ali MA, Pristovšek N, Hartman K, Ekwall K, Sjöblom T. Larsson C, et al. Among authors: ali ma. Clin Epigenetics. 2020 May 29;12(1):74. doi: 10.1186/s13148-020-00863-z. Clin Epigenetics. 2020. PMID: 32471474 Free PMC article.

2

Molecular pathways in tumor progression: from discovery to functional understanding.

Ali MA, Sjöblom T. Ali MA, et al. Mol Biosyst. 2009 Sep;5(9):902-8. doi: 10.1039/b903502h. Epub 2009 Jul 14. Mol Biosyst. 2009. PMID: 19668850 Review.

3

Computational and molecular tools for scalable rAAV-mediated genome editing.

Stoimenov I, Ali MA, Pandzic T, Sjöblom T. Stoimenov I, et al. Among authors: ali ma. Nucleic Acids Res. 2015 Mar 11;43(5):e30. doi: 10.1093/nar/gku1286. Epub 2014 Dec 8. Nucleic Acids Res. 2015. PMID: 25488813 Free PMC article.

4

Loss of DIP2C in RKO cells stimulates changes in DNA methylation and epithelial-mesenchymal transition.

Larsson C, Ali MA, Pandzic T, Lindroth AM, He L, Sjöblom T. Larsson C, et al. Among authors: ali ma. BMC Cancer. 2017 Jul 17;17(1):487. doi: 10.1186/s12885-017-3472-5. BMC Cancer. 2017. PMID: 28716088 Free PMC article.

5

Somatic PRDM2 c.4467delA mutations in colorectal cancers control histone methylation and tumor growth.

Pandzic T, Rendo V, Lim J, Larsson C, Larsson J, Stoimenov I, Kundu S, Ali MA, Hellström M, He L, Lindroth AM, Sjöblom T. Pandzic T, et al. Among authors: ali ma. Oncotarget. 2017 Oct 9;8(58):98646-98659. doi: 10.18632/oncotarget.21713. eCollection 2017 Nov 17. Oncotarget. 2017. PMID: 29228717 Free PMC article.

6

Linking FOXO3, NCOA3, and TCF7L2 to Ras pathway phenotypes through a genome-wide forward genetic screen in human colorectal cancer cells.

Kundu S, Ali MA, Handin N, Padhan N, Larsson J, Karoutsou M, Ban K, Wiśniewski JR, Artursson P, He L, Hellström M, Sjöblom T. Kundu S, et al. Among authors: ali ma. Genome Med. 2018 Jan 4;10(1):2. doi: 10.1186/s13073-017-0511-4. Genome Med. 2018. PMID: 29301589 Free PMC article.

7

Common and mutation specific phenotypes of KRAS and BRAF mutations in colorectal cancer cells revealed by integrative -omics analysis.

Kundu S, Ali MA, Handin N, Conway LP, Rendo V, Artursson P, He L, Globisch D, Sjöblom T. Kundu S, et al. Among authors: ali ma. J Exp Clin Cancer Res. 2021 Jul 7;40(1):225. doi: 10.1186/s13046-021-02025-2. J Exp Clin Cancer Res. 2021. PMID: 34233735 Free PMC article.

8

In situ sequencing identifies TMPRSS2-ERG fusion transcripts, somatic point mutations and gene expression levels in prostate cancers.

Kiflemariam S, Mignardi M, Ali MA, Bergh A, Nilsson M, Sjöblom T. Kiflemariam S, et al. Among authors: ali ma. J Pathol. 2014 Oct;234(2):253-61. doi: 10.1002/path.4392. Epub 2014 Aug 4. J Pathol. 2014. PMID: 24931216

9

Large scale discovery of coronavirus-host factor protein interaction motifs reveals SARS-CoV-2 specific mechanisms and vulnerabilities.

Kruse T, Benz C, Garvanska DH, Lindqvist R, Mihalic F, Coscia F, Inturi R, Sayadi A, Simonetti L, Nilsson E, Ali M, Kliche J, Moliner Morro A, Mund A, Andersson E, McInerney G, Mann M, Jemth P, Davey NE, Överby AK, Nilsson J, Ivarsson Y. Kruse T, et al. Nat Commun. 2021 Nov 19;12(1):6761. doi: 10.1038/s41467-021-26498-z. Nat Commun. 2021. PMID: 34799561 Free PMC article.

10

High-throughput discovery of functional disordered regions.

Ali M, Ivarsson Y. Ali M, et al. Mol Syst Biol. 2018 May 22;14(5):e8377. doi: 10.15252/msb.20188377. Mol Syst Biol. 2018. PMID: 29789308 Free PMC article.

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