Albert R - Search Results

1

Inferring gene regulatory networks using transcriptional profiles as dynamical attractors.

Li R, Rozum JC, Quail MM, Qasim MN, Sindi SS, Nobile CJ, Albert R, Hernday AD. Li R, et al. Among authors: albert r. PLoS Comput Biol. 2023 Aug 22;19(8):e1010991. doi: 10.1371/journal.pcbi.1010991. eCollection 2023 Aug. PLoS Comput Biol. 2023. PMID: 37607190 Free PMC article.

2

Self-sustaining positive feedback loops in discrete and continuous systems.

Rozum JC, Albert R. Rozum JC, et al. Among authors: albert r. J Theor Biol. 2018 Dec 14;459:36-44. doi: 10.1016/j.jtbi.2018.09.017. Epub 2018 Sep 19. J Theor Biol. 2018. PMID: 30240578

3

Identifying (un)controllable dynamical behavior in complex networks.

Rozum JC, Albert R. Rozum JC, et al. Among authors: albert r. PLoS Comput Biol. 2018 Dec 10;14(12):e1006630. doi: 10.1371/journal.pcbi.1006630. eCollection 2018 Dec. PLoS Comput Biol. 2018. PMID: 30532150 Free PMC article.

4

A feedback loop of conditionally stable circuits drives the cell cycle from checkpoint to checkpoint.

Deritei D, Rozum J, Ravasz Regan E, Albert R. Deritei D, et al. Among authors: albert r. Sci Rep. 2019 Nov 11;9(1):16430. doi: 10.1038/s41598-019-52725-1. Sci Rep. 2019. PMID: 31712566 Free PMC article.

5

Mathematical modeling of the Candida albicans yeast to hyphal transition reveals novel control strategies.

Wooten DJ, Zañudo JGT, Murrugarra D, Perry AM, Dongari-Bagtzoglou A, Laubenbacher R, Nobile CJ, Albert R. Wooten DJ, et al. Among authors: albert r. PLoS Comput Biol. 2021 Mar 29;17(3):e1008690. doi: 10.1371/journal.pcbi.1008690. eCollection 2021 Mar. PLoS Comput Biol. 2021. PMID: 33780439 Free PMC article.

6

Parity and time reversal elucidate both decision-making in empirical models and attractor scaling in critical Boolean networks.

Rozum JC, Gómez Tejeda Zañudo J, Gan X, Deritei D, Albert R. Rozum JC, et al. Among authors: albert r. Sci Adv. 2021 Jul 16;7(29):eabf8124. doi: 10.1126/sciadv.abf8124. Print 2021 Jul. Sci Adv. 2021. PMID: 34272246 Free PMC article.

7

pystablemotifs: Python library for attractor identification and control in Boolean networks.

Rozum JC, Deritei D, Park KH, Gómez Tejeda Zañudo J, Albert R. Rozum JC, et al. Among authors: albert r. Bioinformatics. 2022 Feb 7;38(5):1465-1466. doi: 10.1093/bioinformatics/btab825. Bioinformatics. 2022. PMID: 34875008

8

Leveraging network structure in nonlinear control.

Rozum J, Albert R. Rozum J, et al. Among authors: albert r. NPJ Syst Biol Appl. 2022 Oct 1;8(1):36. doi: 10.1038/s41540-022-00249-2. NPJ Syst Biol Appl. 2022. PMID: 36182954 Free PMC article. Review.

9

Models of Cell Processes are Far from the Edge of Chaos.

Park KH, Costa FX, Rocha LM, Albert R, Rozum JC. Park KH, et al. Among authors: albert r. PRX Life. 2023 Dec;1(2):023009. doi: 10.1103/prxlife.1.023009. Epub 2023 Dec 15. PRX Life. 2023. PMID: 38487681 Free PMC article.

10

Modeling systems-level regulation of host immune responses.

Thakar J, Pilione M, Kirimanjeswara G, Harvill ET, Albert R. Thakar J, et al. Among authors: albert r. PLoS Comput Biol. 2007 Jun;3(6):e109. doi: 10.1371/journal.pcbi.0030109. Epub 2007 Apr 30. PLoS Comput Biol. 2007. PMID: 17559300 Free PMC article.

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