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Expanding the Limits of Computer-Assisted Sperm Analysis through the Development of Open Software.
Biology (Basel). 2020 Aug 5;9(8):207. doi: 10.3390/biology9080207.
Biology (Basel). 2020.
PMID: 32764457
Free PMC article.
Memory hierarchy characterization of SPEC CPU2006 and SPEC CPU2017 on the Intel Xeon Skylake-SP.
Navarro-Torres A, Alastruey-Benedé J, Ibáñez-Marín P, Viñals-Yúfera V.
Navarro-Torres A, et al. Among authors: alastruey benede j.
PLoS One. 2019 Aug 1;14(8):e0220135. doi: 10.1371/journal.pone.0220135. eCollection 2019.
PLoS One. 2019.
PMID: 31369592
Free PMC article.
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Accelerating Sequence Alignments Based on FM-Index Using the Intel KNL Processor.
Herruzo JM, Gonzalez-Navarro S, Ibanez-Marin P, Vinals-Yufera V, Alastruey-Benede J, Plata O.
Herruzo JM, et al. Among authors: alastruey benede j.
IEEE/ACM Trans Comput Biol Bioinform. 2020 Jul-Aug;17(4):1093-1104. doi: 10.1109/TCBB.2018.2884701. Epub 2018 Dec 6.
IEEE/ACM Trans Comput Biol Bioinform. 2020.
PMID: 30530369
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Compressed Sparse FM-Index: Fast Sequence Alignment Using Large K-Steps.
Langarita R, Armejach A, Setoain J, Ibanez-Marin P, Alastruey-Benede J, Moreto M.
Langarita R, et al. Among authors: alastruey benede j.
IEEE/ACM Trans Comput Biol Bioinform. 2022 Jan-Feb;19(1):355-368. doi: 10.1109/TCBB.2020.3000253. Epub 2022 Feb 3.
IEEE/ACM Trans Comput Biol Bioinform. 2022.
PMID: 32750858
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Porting and Optimizing BWA-MEM2 Using the Fujitsu A64FX Processor.
Langarita R, Armejach A, Ibanez P, Alastruey-Benede J, Moreto M.
Langarita R, et al. Among authors: alastruey benede j.
IEEE/ACM Trans Comput Biol Bioinform. 2023 Sep-Oct;20(5):3139-3153. doi: 10.1109/TCBB.2023.3264514. Epub 2023 Oct 9.
IEEE/ACM Trans Comput Biol Bioinform. 2023.
PMID: 37018085
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