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Nanopore native RNA sequencing of a human poly(A) transcriptome.
Workman RE, Tang AD, Tang PS, Jain M, Tyson JR, Razaghi R, Zuzarte PC, Gilpatrick T, Payne A, Quick J, Sadowski N, Holmes N, de Jesus JG, Jones KL, Soulette CM, Snutch TP, Loman N, Paten B, Loose M, Simpson JT, Olsen HE, Brooks AN, Akeson M, Timp W. Workman RE, et al. Among authors: akeson m. Nat Methods. 2019 Dec;16(12):1297-1305. doi: 10.1038/s41592-019-0617-2. Epub 2019 Nov 18. Nat Methods. 2019. PMID: 31740818 Free PMC article.
Improved data analysis for the MinION nanopore sequencer.
Jain M, Fiddes IT, Miga KH, Olsen HE, Paten B, Akeson M. Jain M, et al. Among authors: akeson m. Nat Methods. 2015 Apr;12(4):351-6. doi: 10.1038/nmeth.3290. Epub 2015 Feb 16. Nat Methods. 2015. PMID: 25686389 Free PMC article.
Mapping DNA methylation with high-throughput nanopore sequencing.
Rand AC, Jain M, Eizenga JM, Musselman-Brown A, Olsen HE, Akeson M, Paten B. Rand AC, et al. Among authors: akeson m. Nat Methods. 2017 Apr;14(4):411-413. doi: 10.1038/nmeth.4189. Epub 2017 Feb 20. Nat Methods. 2017. PMID: 28218897 Free PMC article.
Author Correction: Nanopore native RNA sequencing of a human poly(A) transcriptome.
Workman RE, Tang AD, Tang PS, Jain M, Tyson JR, Razaghi R, Zuzarte PC, Gilpatrick T, Payne A, Quick J, Sadowski N, Holmes N, de Jesus JG, Jones KL, Soulette CM, Snutch TP, Loman N, Paten B, Loose M, Simpson JT, Olsen HE, Brooks AN, Akeson M, Timp W. Workman RE, et al. Among authors: akeson m. Nat Methods. 2020 Jan;17(1):114. doi: 10.1038/s41592-019-0697-z. Nat Methods. 2020. PMID: 31819268
Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes.
Shafin K, Pesout T, Lorig-Roach R, Haukness M, Olsen HE, Bosworth C, Armstrong J, Tigyi K, Maurer N, Koren S, Sedlazeck FJ, Marschall T, Mayes S, Costa V, Zook JM, Liu KJ, Kilburn D, Sorensen M, Munson KM, Vollger MR, Monlong J, Garrison E, Eichler EE, Salama S, Haussler D, Green RE, Akeson M, Phillippy A, Miga KH, Carnevali P, Jain M, Paten B. Shafin K, et al. Among authors: akeson m. Nat Biotechnol. 2020 Sep;38(9):1044-1053. doi: 10.1038/s41587-020-0503-6. Epub 2020 May 4. Nat Biotechnol. 2020. PMID: 32686750 Free PMC article.
Advances in nanopore direct RNA sequencing.
Jain M, Abu-Shumays R, Olsen HE, Akeson M. Jain M, et al. Among authors: akeson m. Nat Methods. 2022 Oct;19(10):1160-1164. doi: 10.1038/s41592-022-01633-w. Nat Methods. 2022. PMID: 36203024 No abstract available.
Direct Nanopore Sequencing of Individual Full Length tRNA Strands.
Thomas NK, Poodari VC, Jain M, Olsen HE, Akeson M, Abu-Shumays RL. Thomas NK, et al. Among authors: akeson m. ACS Nano. 2021 Oct 26;15(10):16642-16653. doi: 10.1021/acsnano.1c06488. Epub 2021 Oct 7. ACS Nano. 2021. PMID: 34618430 Free PMC article.
80 results