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Genome sequencing of Porostereum spadiceum to study the degradation of levofloxacin.
Ben Ayed A, Akrout I, Staita K, Albert Q, Greff S, Simmler C, Ahrendt S, LaButti K, Lipzen A, He G, Savage E, Armengaud J, Kielbasa M, Navarro D, Drula E, Turbé-Doan A, Bertrand E, Lomascolo A, Chaduli D, Faulds CB, Chamkha M, Maalej A, Barry K, Grigoriev IV, Martin F, Zouari-Mechichi H, Sciara G, Mechichi T, Record E. Ben Ayed A, et al. Among authors: ahrendt s. Ecotoxicol Environ Saf. 2024 Jan 15;270:115808. doi: 10.1016/j.ecoenv.2023.115808. Epub 2024 Jan 9. Ecotoxicol Environ Saf. 2024. PMID: 38198896 Free article.
Substrate-Specific Differential Gene Expression and RNA Editing in the Brown Rot Fungus Fomitopsis pinicola.
Wu B, Gaskell J, Held BW, Toapanta C, Vuong T, Ahrendt S, Lipzen A, Zhang J, Schilling JS, Master E, Grigoriev IV, Blanchette RA, Cullen D, Hibbett DS. Wu B, et al. Among authors: ahrendt s. Appl Environ Microbiol. 2018 Aug 1;84(16):e00991-18. doi: 10.1128/AEM.00991-18. Print 2018 Aug 15. Appl Environ Microbiol. 2018. PMID: 29884757 Free PMC article. Retracted.
Leveraging single-cell genomics to expand the fungal tree of life.
Ahrendt SR, Quandt CA, Ciobanu D, Clum A, Salamov A, Andreopoulos B, Cheng JF, Woyke T, Pelin A, Henrissat B, Reynolds NK, Benny GL, Smith ME, James TY, Grigoriev IV. Ahrendt SR, et al. Nat Microbiol. 2018 Dec;3(12):1417-1428. doi: 10.1038/s41564-018-0261-0. Epub 2018 Oct 8. Nat Microbiol. 2018. PMID: 30297742 Free PMC article.
Draft Genome Sequences of Three Monokaryotic Isolates of the White-Rot Basidiomycete Fungus Dichomitus squalens.
Casado López S, Peng M, Daly P, Andreopoulos B, Pangilinan J, Lipzen A, Riley R, Ahrendt S, Ng V, Barry K, Daum C, Grigoriev IV, Hildén KS, Mäkelä MR, de Vries RP. Casado López S, et al. Among authors: ahrendt s. Microbiol Resour Announc. 2019 May 2;8(18):e00264-19. doi: 10.1128/MRA.00264-19. Microbiol Resour Announc. 2019. PMID: 31048399 Free PMC article.
Conserved white-rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus.
Miyauchi S, Hage H, Drula E, Lesage-Meessen L, Berrin JG, Navarro D, Favel A, Chaduli D, Grisel S, Haon M, Piumi F, Levasseur A, Lomascolo A, Ahrendt S, Barry K, LaButti KM, Chevret D, Daum C, Mariette J, Klopp C, Cullen D, de Vries RP, Gathman AC, Hainaut M, Henrissat B, Hildén KS, Kües U, Lilly W, Lipzen A, Mäkelä MR, Martinez AT, Morel-Rouhier M, Morin E, Pangilinan J, Ram AFJ, Wösten HAB, Ruiz-Dueñas FJ, Riley R, Record E, Grigoriev IV, Rosso MN. Miyauchi S, et al. Among authors: ahrendt s. DNA Res. 2020 Apr 1;27(2):dsaa011. doi: 10.1093/dnares/dsaa011. DNA Res. 2020. PMID: 32531032 Free PMC article.
PhycoCosm, a comparative algal genomics resource.
Grigoriev IV, Hayes RD, Calhoun S, Kamel B, Wang A, Ahrendt S, Dusheyko S, Nikitin R, Mondo SJ, Salamov A, Shabalov I, Kuo A. Grigoriev IV, et al. Among authors: ahrendt s. Nucleic Acids Res. 2021 Jan 8;49(D1):D1004-D1011. doi: 10.1093/nar/gkaa898. Nucleic Acids Res. 2021. PMID: 33104790 Free PMC article.
Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay.
Hage H, Miyauchi S, Virágh M, Drula E, Min B, Chaduli D, Navarro D, Favel A, Norest M, Lesage-Meessen L, Bálint B, Merényi Z, de Eugenio L, Morin E, Martínez AT, Baldrian P, Štursová M, Martínez MJ, Novotny C, Magnuson JK, Spatafora JW, Maurice S, Pangilinan J, Andreopoulos W, LaButti K, Hundley H, Na H, Kuo A, Barry K, Lipzen A, Henrissat B, Riley R, Ahrendt S, Nagy LG, Grigoriev IV, Martin F, Rosso MN. Hage H, et al. Among authors: ahrendt s. Environ Microbiol. 2021 Oct;23(10):5716-5732. doi: 10.1111/1462-2920.15423. Epub 2021 Feb 15. Environ Microbiol. 2021. PMID: 33538380 Free PMC article.
A single-cell genomics pipeline for environmental microbial eukaryotes.
Ciobanu D, Clum A, Ahrendt S, Andreopoulos WB, Salamov A, Chan S, Quandt CA, Foster B, Meier-Kolthoff JP, Tang YT, Schwientek P, Benny GL, Smith ME, Bauer D, Deshpande S, Barry K, Copeland A, Singer SW, Woyke T, Grigoriev IV, James TY, Cheng JF. Ciobanu D, et al. Among authors: ahrendt s. iScience. 2021 Mar 10;24(4):102290. doi: 10.1016/j.isci.2021.102290. eCollection 2021 Apr 23. iScience. 2021. PMID: 33870123 Free PMC article.
Retracted and Republished from: "Substrate-Specific Differential Gene Expression and RNA Editing in the Brown Rot Fungus Fomitopsis pinicola".
Wu B, Gaskell J, Held BW, Toapanta C, Vuong TV, Ahrendt S, Lipzen A, Zhang J, Schilling JS, Master E, Grigoriev IV, Blanchette RA, Cullen D, Hibbett DS. Wu B, et al. Among authors: ahrendt s. Appl Environ Microbiol. 2021 Jul 27;87(16):e0032921. doi: 10.1128/AEM.00329-21. Epub 2021 Jul 27. Appl Environ Microbiol. 2021. PMID: 34313495 Free PMC article.
Retraction for Wu et al., "Substrate-Specific Differential Gene Expression and RNA Editing in the Brown Rot Fungus Fomitopsis pinicola".
Wu B, Gaskell J, Held BW, Toapanta C, Vuong T, Ahrendt S, Lipzen A, Zhang J, Schilling JS, Master E, Grigoriev IV, Blanchette RA, Cullen D, Hibbett DS. Wu B, et al. Among authors: ahrendt s. Appl Environ Microbiol. 2021 Jul 27;87(16):e0033021. doi: 10.1128/AEM.00330-21. Epub 2021 Jul 27. Appl Environ Microbiol. 2021. PMID: 34313496 Free PMC article. Corrected and republished. No abstract available.
174 results