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Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes.
Carey ME, Dyson ZA, Ingle DJ, Amir A, Aworh MK, Chattaway MA, Chew KL, Crump JA, Feasey NA, Howden BP, Keddy KH, Maes M, Parry CM, Van Puyvelde S, Webb HE, Afolayan AO, Alexander AP, Anandan S, Andrews JR, Ashton PM, Basnyat B, Bavdekar A, Bogoch II, Clemens JD, da Silva KE, De A, de Ligt J, Diaz Guevara PL, Dolecek C, Dutta S, Ehlers MM, Francois Watkins L, Garrett DO, Godbole G, Gordon MA, Greenhill AR, Griffin C, Gupta M, Hendriksen RS, Heyderman RS, Hooda Y, Hormazabal JC, Ikhimiukor OO, Iqbal J, Jacob JJ, Jenkins C, Jinka DR, John J, Kang G, Kanteh A, Kapil A, Karkey A, Kariuki S, Kingsley RA, Koshy RM, Lauer AC, Levine MM, Lingegowda RK, Luby SP, Mackenzie GA, Mashe T, Msefula C, Mutreja A, Nagaraj G, Nagaraj S, Nair S, Naseri TK, Nimarota-Brown S, Njamkepo E, Okeke IN, Perumal SPB, Pollard AJ, Pragasam AK, Qadri F, Qamar FN, Rahman SIA, Rambocus SD, Rasko DA, Ray P, Robins-Browne R, Rongsen-Chandola T, Rutanga JP, Saha SK, Saha S, Saigal K, Sajib MSI, Seidman JC, Shakya J, Shamanna V, Shastri J, Shrestha R, Sia S, Sikorski MJ, Singh A, Smith AM, Tagg KA, Tamrakar D, Tanmoy AM, Thomas M, Thomas MS, Thomsen R, Thomson NR, Tupua S, Vaidya K, Valcanis M, Veeraraghavan B,… See abstract for full author list ➔ Carey ME, et al. Among authors: afolayan ao. Elife. 2023 Sep 12;12:e85867. doi: 10.7554/eLife.85867. Elife. 2023. PMID: 37697804 Free PMC article.
Train-the-Trainer as an Effective Approach to Building Global Networks of Experts in Genomic Surveillance of Antimicrobial Resistance (AMR).
Abrudan M, Matimba A, Nikolic D, Hughes D, Argimón S, Kekre M, Underwood A, Aanensen DM; NIHR Global Health Research Unit on Genomic Surveillance of Antimicrobial Resistance. Abrudan M, et al. Clin Infect Dis. 2021 Dec 1;73(Suppl_4):S283-S289. doi: 10.1093/cid/ciab770. Clin Infect Dis. 2021. PMID: 34850831 Free PMC article.
Establishing a national reference laboratory for antimicrobial resistance using a whole-genome sequencing framework: Nigeria's experience.
Okeke IN, Aboderin AO, Egwuenu A, Underwood A, Afolayan AO, Kekre M, Oaikhena AO, Odih EE, Omotayo HT, Dada-Adegbola H, Ogunleye VO, Ikhimiukor OO, Aanensen DM, Ihekweazu C. Okeke IN, et al. Among authors: afolayan ao. Microbiology (Reading). 2022 Aug;168(8). doi: 10.1099/mic.0.001208. Microbiology (Reading). 2022. PMID: 35980376 Free article.
Genomic characterization of invasive typhoidal and non-typhoidal Salmonella in southwestern Nigeria.
Ikhimiukor OO, Oaikhena AO, Afolayan AO, Fadeyi A, Kehinde A, Ogunleye VO, Aboderin AO, Oduyebo OO, Elikwu CJ, Odih EE, Komolafe I, Argimón S, Egwuenu A, Adebiyi I, Sadare OA, Okwor T, Kekre M, Underwood A, Ihekweazu C, Aanensen DM, Okeke IN. Ikhimiukor OO, et al. Among authors: afolayan ao. PLoS Negl Trop Dis. 2022 Aug 26;16(8):e0010716. doi: 10.1371/journal.pntd.0010716. eCollection 2022 Aug. PLoS Negl Trop Dis. 2022. PMID: 36026470 Free PMC article.
Integrating Scalable Genome Sequencing Into Microbiology Laboratories for Routine Antimicrobial Resistance Surveillance.
Kekre M, Arevalo SA, Valencia MF, Lagrada ML, Macaranas PKV, Nagaraj G, Oaikhena AO, Olorosa AM, Aanensen DM; NIHR Global Health Research Unit on Genomic Surveillance of Antimicrobial Resistance. Kekre M, et al. Clin Infect Dis. 2021 Dec 1;73(Suppl_4):S258-S266. doi: 10.1093/cid/ciab796. Clin Infect Dis. 2021. PMID: 34850836 Free PMC article.
Rapid Genomic Characterization and Global Surveillance of Klebsiella Using Pathogenwatch.
Argimón S, David S, Underwood A, Abrudan M, Wheeler NE, Kekre M, Abudahab K, Yeats CA, Goater R, Taylor B, Harste H, Muddyman D, Feil EJ, Brisse S, Holt K, Donado-Godoy P, Ravikumar KL, Okeke IN, Carlos C, Aanensen DM; NIHR Global Health Research Unit on Genomic Surveillance of Antimicrobial Resistance. Argimón S, et al. Clin Infect Dis. 2021 Dec 1;73(Suppl_4):S325-S335. doi: 10.1093/cid/ciab784. Clin Infect Dis. 2021. PMID: 34850838 Free PMC article.
High-Resolution Genomic Profiling of Carbapenem-Resistant Klebsiella pneumoniae Isolates: A Multicentric Retrospective Indian Study.
Nagaraj G, Shamanna V, Govindan V, Rose S, Sravani D, Akshata KP, Shincy MR, Venkatesha VT, Abrudan M, Argimón S, Kekre M, Underwood A, Aanensen DM, Ravikumar KL; NIHR Global Health Research Unit on Genomic Surveillance of Antimicrobial Resistance. Nagaraj G, et al. Clin Infect Dis. 2021 Dec 1;73(Suppl_4):S300-S307. doi: 10.1093/cid/ciab767. Clin Infect Dis. 2021. PMID: 34850832 Free PMC article.
Genome Sequencing Identifies Previously Unrecognized Klebsiella pneumoniae Outbreaks in Neonatal Intensive Care Units in the Philippines.
Carlos CC, Masim MAL, Lagrada ML, Gayeta JM, Macaranas PKV, Sia SB, Facun MAM, Palarca JFC, Olorosa AM, Cueno GAC, Abrudan M, Abudahab K, Argimón S, Kekre M, Underwood A, Stelling J, Aanensen DM; NIHR Global Health Research Unit on Genomic Surveillance of Antimicrobial Resistance. Carlos CC, et al. Clin Infect Dis. 2021 Dec 1;73(Suppl_4):S316-S324. doi: 10.1093/cid/ciab776. Clin Infect Dis. 2021. PMID: 34850834 Free PMC article.
27 results