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Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments.
Gatto L, Aebersold R, Cox J, Demichev V, Derks J, Emmott E, Franks AM, Ivanov AR, Kelly RT, Khoury L, Leduc A, MacCoss MJ, Nemes P, Perlman DH, Petelski AA, Rose CM, Schoof EM, Van Eyk J, Vanderaa C, Yates JR 3rd, Slavov N. Gatto L, et al. Among authors: aebersold r. Nat Methods. 2023 Mar;20(3):375-386. doi: 10.1038/s41592-023-01785-3. Epub 2023 Mar 2. Nat Methods. 2023. PMID: 36864200 Free PMC article. Review.
A systematic approach to modeling, capturing, and disseminating proteomics experimental data.
Taylor CF, Paton NW, Garwood KL, Kirby PD, Stead DA, Yin Z, Deutsch EW, Selway L, Walker J, Riba-Garcia I, Mohammed S, Deery MJ, Howard JA, Dunkley T, Aebersold R, Kell DB, Lilley KS, Roepstorff P, Yates JR 3rd, Brass A, Brown AJ, Cash P, Gaskell SJ, Hubbard SJ, Oliver SG. Taylor CF, et al. Among authors: aebersold r. Nat Biotechnol. 2003 Mar;21(3):247-54. doi: 10.1038/nbt0303-247. Nat Biotechnol. 2003. PMID: 12610571
Mass spectrometry-based proteomics.
Aebersold R, Mann M. Aebersold R, et al. Nature. 2003 Mar 13;422(6928):198-207. doi: 10.1038/nature01511. Nature. 2003. PMID: 12634793 Review.
A common open representation of mass spectrometry data and its application to proteomics research.
Pedrioli PG, Eng JK, Hubley R, Vogelzang M, Deutsch EW, Raught B, Pratt B, Nilsson E, Angeletti RH, Apweiler R, Cheung K, Costello CE, Hermjakob H, Huang S, Julian RK, Kapp E, McComb ME, Oliver SG, Omenn G, Paton NW, Simpson R, Smith R, Taylor CF, Zhu W, Aebersold R. Pedrioli PG, et al. Among authors: aebersold r. Nat Biotechnol. 2004 Nov;22(11):1459-66. doi: 10.1038/nbt1031. Nat Biotechnol. 2004. PMID: 15529173
Computational prediction of proteotypic peptides for quantitative proteomics.
Mallick P, Schirle M, Chen SS, Flory MR, Lee H, Martin D, Ranish J, Raught B, Schmitt R, Werner T, Kuster B, Aebersold R. Mallick P, et al. Among authors: aebersold r. Nat Biotechnol. 2007 Jan;25(1):125-31. doi: 10.1038/nbt1275. Epub 2006 Dec 31. Nat Biotechnol. 2007. PMID: 17195840
The minimum information about a proteomics experiment (MIAPE).
Taylor CF, Paton NW, Lilley KS, Binz PA, Julian RK Jr, Jones AR, Zhu W, Apweiler R, Aebersold R, Deutsch EW, Dunn MJ, Heck AJ, Leitner A, Macht M, Mann M, Martens L, Neubert TA, Patterson SD, Ping P, Seymour SL, Souda P, Tsugita A, Vandekerckhove J, Vondriska TM, Whitelegge JP, Wilkins MR, Xenarios I, Yates JR 3rd, Hermjakob H. Taylor CF, et al. Among authors: aebersold r. Nat Biotechnol. 2007 Aug;25(8):887-93. doi: 10.1038/nbt1329. Nat Biotechnol. 2007. PMID: 17687369 Review.
Quantitative interaction proteomics using mass spectrometry.
Wepf A, Glatter T, Schmidt A, Aebersold R, Gstaiger M. Wepf A, et al. Among authors: aebersold r. Nat Methods. 2009 Mar;6(3):203-5. doi: 10.1038/nmeth.1302. Epub 2009 Feb 8. Nat Methods. 2009. PMID: 19198594
Visual proteomics of the human pathogen Leptospira interrogans.
Beck M, Malmström JA, Lange V, Schmidt A, Deutsch EW, Aebersold R. Beck M, et al. Among authors: aebersold r. Nat Methods. 2009 Nov;6(11):817-23. doi: 10.1038/nmeth.1390. Epub 2009 Oct 18. Nat Methods. 2009. PMID: 19838170 Free PMC article.
897 results