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A computational framework to explore large-scale biosynthetic diversity.
Navarro-Muñoz JC, Selem-Mojica N, Mullowney MW, Kautsar SA, Tryon JH, Parkinson EI, De Los Santos ELC, Yeong M, Cruz-Morales P, Abubucker S, Roeters A, Lokhorst W, Fernandez-Guerra A, Cappelini LTD, Goering AW, Thomson RJ, Metcalf WW, Kelleher NL, Barona-Gomez F, Medema MH. Navarro-Muñoz JC, et al. Among authors: abubucker s. Nat Chem Biol. 2020 Jan;16(1):60-68. doi: 10.1038/s41589-019-0400-9. Epub 2019 Nov 25. Nat Chem Biol. 2020. PMID: 31768033 Free PMC article.
A framework for human microbiome research.
Human Microbiome Project Consortium. Human Microbiome Project Consortium. Nature. 2012 Jun 13;486(7402):215-21. doi: 10.1038/nature11209. Nature. 2012. PMID: 22699610 Free PMC article.
Metabolic reconstruction for metagenomic data and its application to the human microbiome.
Abubucker S, Segata N, Goll J, Schubert AM, Izard J, Cantarel BL, Rodriguez-Mueller B, Zucker J, Thiagarajan M, Henrissat B, White O, Kelley ST, Methé B, Schloss PD, Gevers D, Mitreva M, Huttenhower C. Abubucker S, et al. PLoS Comput Biol. 2012;8(6):e1002358. doi: 10.1371/journal.pcbi.1002358. Epub 2012 Jun 13. PLoS Comput Biol. 2012. PMID: 22719234 Free PMC article.
The draft genome of the parasitic nematode Trichinella spiralis.
Mitreva M, Jasmer DP, Zarlenga DS, Wang Z, Abubucker S, Martin J, Taylor CM, Yin Y, Fulton L, Minx P, Yang SP, Warren WC, Fulton RS, Bhonagiri V, Zhang X, Hallsworth-Pepin K, Clifton SW, McCarter JP, Appleton J, Mardis ER, Wilson RK. Mitreva M, et al. Among authors: abubucker s. Nat Genet. 2011 Mar;43(3):228-35. doi: 10.1038/ng.769. Epub 2011 Feb 20. Nat Genet. 2011. PMID: 21336279 Free PMC article.
Metabolic and metagenomic outcomes from early-life pulsed antibiotic treatment.
Nobel YR, Cox LM, Kirigin FF, Bokulich NA, Yamanishi S, Teitler I, Chung J, Sohn J, Barber CM, Goldfarb DS, Raju K, Abubucker S, Zhou Y, Ruiz VE, Li H, Mitreva M, Alekseyenko AV, Weinstock GM, Sodergren E, Blaser MJ. Nobel YR, et al. Among authors: abubucker s. Nat Commun. 2015 Jun 30;6:7486. doi: 10.1038/ncomms8486. Nat Commun. 2015. PMID: 26123276 Free PMC article.
Genome of the human hookworm Necator americanus.
Tang YT, Gao X, Rosa BA, Abubucker S, Hallsworth-Pepin K, Martin J, Tyagi R, Heizer E, Zhang X, Bhonagiri-Palsikar V, Minx P, Warren WC, Wang Q, Zhan B, Hotez PJ, Sternberg PW, Dougall A, Gaze ST, Mulvenna J, Sotillo J, Ranganathan S, Rabelo EM, Wilson RW, Felgner PL, Bethony J, Hawdon JM, Gasser RB, Loukas A, Mitreva M. Tang YT, et al. Among authors: abubucker s. Nat Genet. 2014 Mar;46(3):261-269. doi: 10.1038/ng.2875. Epub 2014 Jan 19. Nat Genet. 2014. PMID: 24441737 Free PMC article.
mBLAST: Keeping up with the sequencing explosion for (meta)genome analysis.
Davis C, Kota K, Baldhandapani V, Gong W, Abubucker S, Becker E, Martin J, Wylie KM, Khetani R, Hudson ME, Weinstock GM, Mitreva M. Davis C, et al. Among authors: abubucker s. J Data Mining Genomics Proteomics. 2015 Aug;4(3):135. doi: 10.4172/2153-0602.1000135. Epub 2013 Jul 31. J Data Mining Genomics Proteomics. 2015. PMID: 26500804 Free PMC article.
45 results