Abnousi A - Search Results

1

Global analysis of histone modifications and long-range chromatin interactions revealed the differential cistrome changes and novel transcriptional players in human dilated cardiomyopathy.

Liu CF, Abnousi A, Bazeley P, Ni Y, Morley M, Moravec CS, Hu M, Tang WHW. Liu CF, et al. Among authors: abnousi a. J Mol Cell Cardiol. 2020 Aug;145:30-42. doi: 10.1016/j.yjmcc.2020.06.001. Epub 2020 Jun 10. J Mol Cell Cardiol. 2020. PMID: 32533974 Free PMC article.

2

HiC-ACT: improved detection of chromatin interactions from Hi-C data via aggregated Cauchy test.

Lagler TM, Abnousi A, Hu M, Yang Y, Li Y. Lagler TM, et al. Among authors: abnousi a. Am J Hum Genet. 2021 Feb 4;108(2):257-268. doi: 10.1016/j.ajhg.2021.01.009. Am J Hum Genet. 2021. PMID: 33545029 Free PMC article.

3

Proximity Ligation-Assisted ChIP-Seq (PLAC-Seq).

Yu M, Juric I, Abnousi A, Hu M, Ren B. Yu M, et al. Among authors: abnousi a. Methods Mol Biol. 2021;2351:181-199. doi: 10.1007/978-1-0716-1597-3_10. Methods Mol Biol. 2021. PMID: 34382190

4

MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments.

Juric I, Yu M, Abnousi A, Raviram R, Fang R, Zhao Y, Zhang Y, Qiu Y, Yang Y, Li Y, Ren B, Hu M. Juric I, et al. Among authors: abnousi a. PLoS Comput Biol. 2019 Apr 15;15(4):e1006982. doi: 10.1371/journal.pcbi.1006982. eCollection 2019 Apr. PLoS Comput Biol. 2019. PMID: 30986246 Free PMC article.

5

MUNIn: A statistical framework for identifying long-range chromatin interactions from multiple samples.

Liu W, Yang Y, Abnousi A, Zhang Q, Kubo N, Beem JSM, Li Y, Hu M. Liu W, et al. Among authors: abnousi a. HGG Adv. 2021 Jul 8;2(3):100036. doi: 10.1016/j.xhgg.2021.100036. Epub 2021 May 23. HGG Adv. 2021. PMID: 34485947 Free PMC article.

6

HPRep: Quantifying Reproducibility in HiChIP and PLAC-Seq Datasets.

Rosen JD, Yang Y, Abnousi A, Chen J, Song M, Jones IR, Shen Y, Hu M, Li Y. Rosen JD, et al. Among authors: abnousi a. Curr Issues Mol Biol. 2021 Sep 17;43(2):1156-1170. doi: 10.3390/cimb43020082. Curr Issues Mol Biol. 2021. PMID: 34563051 Free PMC article.

7

An ultra high-throughput method for single-cell joint analysis of open chromatin and transcriptome.

Zhu C, Yu M, Huang H, Juric I, Abnousi A, Hu R, Lucero J, Behrens MM, Hu M, Ren B. Zhu C, et al. Among authors: abnousi a. Nat Struct Mol Biol. 2019 Nov;26(11):1063-1070. doi: 10.1038/s41594-019-0323-x. Epub 2019 Nov 6. Nat Struct Mol Biol. 2019. PMID: 31695190 Free PMC article.

8

Cell-type-specific 3D epigenomes in the developing human cortex.

Song M, Pebworth MP, Yang X, Abnousi A, Fan C, Wen J, Rosen JD, Choudhary MNK, Cui X, Jones IR, Bergenholtz S, Eze UC, Juric I, Li B, Maliskova L, Lee J, Liu W, Pollen AA, Li Y, Wang T, Hu M, Kriegstein AR, Shen Y. Song M, et al. Among authors: abnousi a. Nature. 2020 Nov;587(7835):644-649. doi: 10.1038/s41586-020-2825-4. Epub 2020 Oct 14. Nature. 2020. PMID: 33057195 Free PMC article.

9

Sensory experience remodels genome architecture in neural circuit to drive motor learning.

Yamada T, Yang Y, Valnegri P, Juric I, Abnousi A, Markwalter KH, Guthrie AN, Godec A, Oldenborg A, Hu M, Holy TE, Bonni A. Yamada T, et al. Among authors: abnousi a. Nature. 2019 May;569(7758):708-713. doi: 10.1038/s41586-019-1190-7. Epub 2019 May 8. Nature. 2019. PMID: 31068695 Free PMC article.

10

A systematic evaluation of Hi-C data enhancement methods for enhancing PLAC-seq and HiChIP data.

Huang L, Yang Y, Li G, Jiang M, Wen J, Abnousi A, Rosen JD, Hu M, Li Y. Huang L, et al. Among authors: abnousi a. Brief Bioinform. 2022 May 13;23(3):bbac145. doi: 10.1093/bib/bbac145. Brief Bioinform. 2022. PMID: 35488276 Free PMC article.

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