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The genome sequence of segmental allotetraploid peanut Arachis hypogaea.
Bertioli DJ, Jenkins J, Clevenger J, Dudchenko O, Gao D, Seijo G, Leal-Bertioli SCM, Ren L, Farmer AD, Pandey MK, Samoluk SS, Abernathy B, Agarwal G, Ballén-Taborda C, Cameron C, Campbell J, Chavarro C, Chitikineni A, Chu Y, Dash S, El Baidouri M, Guo B, Huang W, Kim KD, Korani W, Lanciano S, Lui CG, Mirouze M, Moretzsohn MC, Pham M, Shin JH, Shirasawa K, Sinharoy S, Sreedasyam A, Weeks NT, Zhang X, Zheng Z, Sun Z, Froenicke L, Aiden EL, Michelmore R, Varshney RK, Holbrook CC, Cannon EKS, Scheffler BE, Grimwood J, Ozias-Akins P, Cannon SB, Jackson SA, Schmutz J. Bertioli DJ, et al. Among authors: abernathy b. Nat Genet. 2019 May;51(5):877-884. doi: 10.1038/s41588-019-0405-z. Epub 2019 May 1. Nat Genet. 2019. PMID: 31043755
Genome sequence of the palaeopolyploid soybean.
Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, Xu D, Hellsten U, May GD, Yu Y, Sakurai T, Umezawa T, Bhattacharyya MK, Sandhu D, Valliyodan B, Lindquist E, Peto M, Grant D, Shu S, Goodstein D, Barry K, Futrell-Griggs M, Abernathy B, Du J, Tian Z, Zhu L, Gill N, Joshi T, Libault M, Sethuraman A, Zhang XC, Shinozaki K, Nguyen HT, Wing RA, Cregan P, Specht J, Grimwood J, Rokhsar D, Stacey G, Shoemaker RC, Jackson SA. Schmutz J, et al. Among authors: abernathy b. Nature. 2010 Jan 14;463(7278):178-83. doi: 10.1038/nature08670. Nature. 2010. PMID: 20075913
Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in pigeonpea (Cajanus cajan L.).
Dubey A, Farmer A, Schlueter J, Cannon SB, Abernathy B, Tuteja R, Woodward J, Shah T, Mulasmanovic B, Kudapa H, Raju NL, Gothalwal R, Pande S, Xiao Y, Town CD, Singh NK, May GD, Jackson S, Varshney RK. Dubey A, et al. Among authors: abernathy b. DNA Res. 2011 Jun;18(3):153-64. doi: 10.1093/dnares/dsr007. Epub 2011 May 12. DNA Res. 2011. PMID: 21565938 Free PMC article.
Identification and characterization of functional centromeres of the common bean.
Iwata A, Tek AL, Richard MM, Abernathy B, Fonsêca A, Schmutz J, Chen NW, Thareau V, Magdelenat G, Li Y, Murata M, Pedrosa-Harand A, Geffroy V, Nagaki K, Jackson SA. Iwata A, et al. Among authors: abernathy b. Plant J. 2013 Oct;76(1):47-60. doi: 10.1111/tpj.12269. Epub 2013 Aug 5. Plant J. 2013. PMID: 23795942 Free article.
A reference genome for common bean and genome-wide analysis of dual domestications.
Schmutz J, McClean PE, Mamidi S, Wu GA, Cannon SB, Grimwood J, Jenkins J, Shu S, Song Q, Chavarro C, Torres-Torres M, Geffroy V, Moghaddam SM, Gao D, Abernathy B, Barry K, Blair M, Brick MA, Chovatia M, Gepts P, Goodstein DM, Gonzales M, Hellsten U, Hyten DL, Jia G, Kelly JD, Kudrna D, Lee R, Richard MM, Miklas PN, Osorno JM, Rodrigues J, Thareau V, Urrea CA, Wang M, Yu Y, Zhang M, Wing RA, Cregan PB, Rokhsar DS, Jackson SA. Schmutz J, et al. Among authors: abernathy b. Nat Genet. 2014 Jul;46(7):707-13. doi: 10.1038/ng.3008. Epub 2014 Jun 8. Nat Genet. 2014. PMID: 24908249 Free PMC article.
Tetrasomic recombination is surprisingly frequent in allotetraploid Arachis.
Leal-Bertioli S, Shirasawa K, Abernathy B, Moretzsohn M, Chavarro C, Clevenger J, Ozias-Akins P, Jackson S, Bertioli D. Leal-Bertioli S, et al. Among authors: abernathy b. Genetics. 2015 Apr;199(4):1093-105. doi: 10.1534/genetics.115.174607. Epub 2015 Feb 20. Genetics. 2015. PMID: 25701284 Free PMC article.
A new approach for annotation of transposable elements using small RNA mapping.
El Baidouri M, Kim KD, Abernathy B, Arikit S, Maumus F, Panaud O, Meyers BC, Jackson SA. El Baidouri M, et al. Among authors: abernathy b. Nucleic Acids Res. 2015 Jul 27;43(13):e84. doi: 10.1093/nar/gkv257. Epub 2015 Mar 26. Nucleic Acids Res. 2015. PMID: 25813049 Free PMC article.
39 results