Šponer J - Search Results

1

Formic Acid, a Ubiquitous but Overlooked Component of the Early Earth Atmosphere.

Mohammadi E, Petera L, Saeidfirozeh H, Knížek A, Kubelík P, Dudžák R, Krůs M, Juha L, Civiš S, Coulon R, Malina O, Ugolotti J, Ranc V, Otyepka M, Šponer J, Ferus M, Šponer JE. Mohammadi E, et al. Among authors: sponer j, sponer je. Chemistry. 2020 Sep 16;26(52):12075-12080. doi: 10.1002/chem.202000323. Epub 2020 Aug 11. Chemistry. 2020. PMID: 32293757

2

Intercalators. 1. Nature of stacking interactions between intercalators (ethidium, daunomycin, ellipticine, and 4',6-diaminide-2-phenylindole) and DNA base pairs. Ab initio quantum chemical, density functional theory, and empirical potential study.

Reha D, Kabelác M, Ryjácek F, Sponer J, Sponer JE, Elstner M, Suhai S, Hobza P. Reha D, et al. Among authors: sponer j, sponer je. J Am Chem Soc. 2002 Apr 3;124(13):3366-76. doi: 10.1021/ja011490d. J Am Chem Soc. 2002. PMID: 11916422

3

Unique tertiary and neighbor interactions determine conservation patterns of Cis Watson-Crick A/G base-pairs.

Sponer J, Mokdad A, Sponer JE, Spacková N, Leszczynski J, Leontis NB. Sponer J, et al. Among authors: sponer je. J Mol Biol. 2003 Jul 25;330(5):967-78. doi: 10.1016/s0022-2836(03)00667-3. J Mol Biol. 2003. PMID: 12860120

4

Molecular dynamics simulations of RNA kissing-loop motifs reveal structural dynamics and formation of cation-binding pockets.

Réblová K, Spacková N, Sponer JE, Koca J, Sponer J. Réblová K, et al. Among authors: sponer j, sponer je. Nucleic Acids Res. 2003 Dec 1;31(23):6942-52. doi: 10.1093/nar/gkg880. Nucleic Acids Res. 2003. PMID: 14627827 Free PMC article.

5

Metal-mediated deamination of cytosine: experiment and DFT calculations.

Sponer JE, Sanz Miguel PJ, Rodríguez-Santiago L, Erxleben A, Krumm M, Sodupe M, Sponer J, Lippert B. Sponer JE, et al. Among authors: sponer j. Angew Chem Int Ed Engl. 2004 Oct 11;43(40):5396-9. doi: 10.1002/anie.200460107. Angew Chem Int Ed Engl. 2004. PMID: 15468078 No abstract available.

6

Non-Watson-Crick base pairing in RNA. quantum chemical analysis of the cis Watson-Crick/sugar edge base pair family.

Sponer JE, Spacková N, Kulhanek P, Leszczynski J, Sponer J. Sponer JE, et al. Among authors: sponer j. J Phys Chem A. 2005 Mar 17;109(10):2292-301. doi: 10.1021/jp050132k. J Phys Chem A. 2005. PMID: 16838999

7

Principles of RNA base pairing: structures and energies of the trans Watson-Crick/sugar edge base pairs.

Sponer JE, Spackova N, Leszczynski J, Sponer J. Sponer JE, et al. Among authors: sponer j. J Phys Chem B. 2005 Jun 9;109(22):11399-410. doi: 10.1021/jp051126r. J Phys Chem B. 2005. PMID: 16852393

8

Sugar edge/sugar edge base pairs in RNA: stabilities and structures from quantum chemical calculations.

Sponer JE, Leszczynski J, Sychrovský V, Sponer J. Sponer JE, et al. Among authors: sponer j. J Phys Chem B. 2005 Oct 6;109(39):18680-9. doi: 10.1021/jp053379q. J Phys Chem B. 2005. PMID: 16853403

9

Mechanism of action of anticancer titanocene derivatives: an insight from quantum chemical calculations.

Sponer JE, Leszczynski J, Sponer J. Sponer JE, et al. Among authors: sponer j. J Phys Chem B. 2006 Oct 5;110(39):19632-6. doi: 10.1021/jp063477r. J Phys Chem B. 2006. PMID: 17004831

10

Leading RNA tertiary interactions: structures, energies, and water insertion of A-minor and P-interactions. A quantum chemical view.

Sponer JE, Réblova K, Mokdad A, Sychrovský V, Leszczynski J, Sponer J. Sponer JE, et al. Among authors: sponer j. J Phys Chem B. 2007 Aug 2;111(30):9153-64. doi: 10.1021/jp0704261. Epub 2007 Jun 29. J Phys Chem B. 2007. PMID: 17602515

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