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Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes.
Bertrand D, Shaw J, Kalathiyappan M, Ng AHQ, Kumar MS, Li C, Dvornicic M, Soldo JP, Koh JY, Tong C, Ng OT, Barkham T, Young B, Marimuthu K, Chng KR, Sikic M, Nagarajan N. Bertrand D, et al. Among authors: sikic m. Nat Biotechnol. 2019 Aug;37(8):937-944. doi: 10.1038/s41587-019-0191-2. Epub 2019 Jul 29. Nat Biotechnol. 2019. PMID: 31359005
Time- and memory-efficient genome assembly with Raven.
Vaser R, Šikić M. Vaser R, et al. Among authors: sikic m. Nat Comput Sci. 2021 May;1(5):332-336. doi: 10.1038/s43588-021-00073-4. Epub 2021 May 20. Nat Comput Sci. 2021. PMID: 38217213
SW#-GPU-enabled exact alignments on genome scale.
Korpar M, Šikic M. Korpar M, et al. Among authors: sikic m. Bioinformatics. 2013 Oct 1;29(19):2494-5. doi: 10.1093/bioinformatics/btt410. Epub 2013 Jul 17. Bioinformatics. 2013. PMID: 23864730 Free PMC article.
SWORD-a highly efficient protein database search.
Vaser R, Pavlović D, Šikić M. Vaser R, et al. Among authors: sikic m. Bioinformatics. 2016 Sep 1;32(17):i680-i684. doi: 10.1093/bioinformatics/btw445. Bioinformatics. 2016. PMID: 27587689
31 results