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Ionmob: a Python package for prediction of peptide collisional cross-section values.
Teschner D, Gomez-Zepeda D, Declercq A, Łącki MK, Avci S, Bob K, Distler U, Michna T, Martens L, Tenzer S, Hildebrandt A. Teschner D, et al. Among authors: lacki mk. Bioinformatics. 2023 Sep 2;39(9):btad486. doi: 10.1093/bioinformatics/btad486. Bioinformatics. 2023. PMID: 37540201 Free PMC article.
Modulation of cellular transcriptome and proteome composition by azidohomoalanine-implications on click chemistry-based secretome analysis.
Kirschner F, Arnold-Schild D, Leps C, Łącki MK, Klein M, Chen Y, Ludt A, Marini F, Kücük C, Stein L, Distler U, Sielaff M, Michna T, Riegel K, Rajalingam K, Bopp T, Tenzer S, Schild H. Kirschner F, et al. Among authors: lacki mk. J Mol Med (Berl). 2023 Jul;101(7):855-867. doi: 10.1007/s00109-023-02333-4. Epub 2023 May 26. J Mol Med (Berl). 2023. PMID: 37231147 Free PMC article.
Thunder-DDA-PASEF enables high-coverage immunopeptidomics and is boosted by MS2Rescore with MS2PIP timsTOF fragmentation prediction model.
Gomez-Zepeda D, Arnold-Schild D, Beyrle J, Declercq A, Gabriels R, Kumm E, Preikschat A, Łącki MK, Hirschler A, Rijal JB, Carapito C, Martens L, Distler U, Schild H, Tenzer S. Gomez-Zepeda D, et al. Among authors: lacki mk. Nat Commun. 2024 Mar 13;15(1):2288. doi: 10.1038/s41467-024-46380-y. Nat Commun. 2024. PMID: 38480730 Free PMC article.
IsoSpec2: Ultrafast Fine Structure Calculator.
Łącki MK, Valkenborg D, Startek MP. Łącki MK, et al. Anal Chem. 2020 Jul 21;92(14):9472-9475. doi: 10.1021/acs.analchem.0c00959. Epub 2020 Jun 24. Anal Chem. 2020. PMID: 32501003
13 results