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OME-Zarr: a cloud-optimized bioimaging file format with international community support.
Moore J, Basurto-Lozada D, Besson S, Bogovic J, Bragantini J, Brown EM, Burel JM, Casas Moreno X, de Medeiros G, Diel EE, Gault D, Ghosh SS, Gold I, Halchenko YO, Hartley M, Horsfall D, Keller MS, Kittisopikul M, Kovacs G, Küpcü Yoldaş A, Kyoda K, le Tournoulx de la Villegeorges A, Li T, Liberali P, Lindner D, Linkert M, Lüthi J, Maitin-Shepard J, Manz T, Marconato L, McCormick M, Lange M, Mohamed K, Moore W, Norlin N, Ouyang W, Özdemir B, Palla G, Pape C, Pelkmans L, Pietzsch T, Preibisch S, Prete M, Rzepka N, Samee S, Schaub N, Sidky H, Solak AC, Stirling DR, Striebel J, Tischer C, Toloudis D, Virshup I, Walczysko P, Watson AM, Weisbart E, Wong F, Yamauchi KA, Bayraktar O, Cimini BA, Gehlenborg N, Haniffa M, Hotaling N, Onami S, Royer LA, Saalfeld S, Stegle O, Theis FJ, Swedlow JR. Moore J, et al. Among authors: ozdemir b. Histochem Cell Biol. 2023 Sep;160(3):223-251. doi: 10.1007/s00418-023-02209-1. Epub 2023 Jul 10. Histochem Cell Biol. 2023. PMID: 37428210 Free PMC article.
Building a FAIR image data ecosystem for microscopy communities.
Kemmer I, Keppler A, Serrano-Solano B, Rybina A, Özdemir B, Bischof J, El Ghadraoui A, Eriksson JE, Mathur A. Kemmer I, et al. Among authors: ozdemir b. Histochem Cell Biol. 2023 Sep;160(3):199-209. doi: 10.1007/s00418-023-02203-7. Epub 2023 Jun 21. Histochem Cell Biol. 2023. PMID: 37341795 Free PMC article. Review.
A deeply conserved protease, acylamino acid-releasing enzyme (AARE), acts in ageing in Physcomitrella and Arabidopsis.
Hoernstein SNW, Özdemir B, van Gessel N, Miniera AA, Rogalla von Bieberstein B, Nilges L, Schweikert Farinha J, Komoll R, Glauz S, Weckerle T, Scherzinger F, Rodriguez-Franco M, Müller-Schüssele SJ, Reski R. Hoernstein SNW, et al. Among authors: ozdemir b. Commun Biol. 2023 Jan 17;6(1):61. doi: 10.1038/s42003-023-04428-7. Commun Biol. 2023. PMID: 36650210 Free PMC article.
Test-time augmentation with synthetic data addresses distribution shifts in spectral imaging.
Qasim AB, Motta A, Studier-Fischer A, Sellner J, Ayala L, Hübner M, Bressan M, Özdemir B, Kowalewski KF, Nickel F, Seidlitz S, Maier-Hein L. Qasim AB, et al. Among authors: ozdemir b. Int J Comput Assist Radiol Surg. 2024 Mar 14. doi: 10.1007/s11548-024-03085-3. Online ahead of print. Int J Comput Assist Radiol Surg. 2024. PMID: 38483702
Safety and quality of cystectomy and pelvic lymph node dissection after neoadjuvant durvalumab and cisplatin/gemcitabine.
Afferi L, Spahn M, Hayoz S, Strebel RT, Rothschild SI, Seifert H, Özdemir BC, Kiss B, Maletzki P, Engeler D, Wirth G, Hadaschik B, Lucca I, John H, Sauer A, Müntener M, Bubendorf L, Schneider M, Musilova J, Petrausch U, Cathomas R; Swiss Group for Clinical Cancer Research (SAKK). Afferi L, et al. Among authors: ozdemir bc. BJU Int. 2024 Mar 8. doi: 10.1111/bju.16318. Online ahead of print. BJU Int. 2024. PMID: 38456541
576 results