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A Galaxy of informatics resources for MS-based proteomics.
Mehta S, Bernt M, Chambers M, Fahrner M, Föll MC, Gruening B, Horro C, Johnson JE, Loux V, Rajczewski AT, Schilling O, Vandenbrouck Y, Gustafsson OJR, Thang WCM, Hyde C, Price G, Jagtap PD, Griffin TJ. Mehta S, et al. Expert Rev Proteomics. 2023 Jul-Dec;20(11):251-266. doi: 10.1080/14789450.2023.2265062. Epub 2023 Oct 30. Expert Rev Proteomics. 2023. PMID: 37787106 Review.
Enhanced Proteomic Data Analysis with MetaMorpheus.
Miller RM, Millikin RJ, Rolfs Z, Shortreed MR, Smith LM. Miller RM, et al. Methods Mol Biol. 2023;2426:35-66. doi: 10.1007/978-1-0716-1967-4_3. Methods Mol Biol. 2023. PMID: 36308684 Free PMC article.
Updates on metaQuantome Software for Quantitative Metaproteomics.
Mehta S, Kumar P, Crane M, Johnson JE, Sajulga R, Nguyen DDA, McGowan T, Arntzen MØ, Griffin TJ, Jagtap PD. Mehta S, et al. J Proteome Res. 2021 Apr 2;20(4):2130-2137. doi: 10.1021/acs.jproteome.0c00960. Epub 2021 Mar 8. J Proteome Res. 2021. PMID: 33683127
Ultrafast Peptide Label-Free Quantification with FlashLFQ.
Millikin RJ, Solntsev SK, Shortreed MR, Smith LM. Millikin RJ, et al. J Proteome Res. 2018 Jan 5;17(1):386-391. doi: 10.1021/acs.jproteome.7b00608. Epub 2017 Nov 8. J Proteome Res. 2018. PMID: 29083185 Free PMC article.
Update on the moFF Algorithm for Label-Free Quantitative Proteomics.
Argentini A, Staes A, Grüning B, Mehta S, Easterly C, Griffin TJ, Jagtap P, Impens F, Martens L. Argentini A, et al. J Proteome Res. 2019 Feb 1;18(2):728-731. doi: 10.1021/acs.jproteome.8b00708. Epub 2018 Dec 14. J Proteome Res. 2019. PMID: 30511867
An Accessible Proteogenomics Informatics Resource for Cancer Researchers.
Chambers MC, Jagtap PD, Johnson JE, McGowan T, Kumar P, Onsongo G, Guerrero CR, Barsnes H, Vaudel M, Martens L, Grüning B, Cooke IR, Heydarian M, Reddy KL, Griffin TJ. Chambers MC, et al. Cancer Res. 2017 Nov 1;77(21):e43-e46. doi: 10.1158/0008-5472.CAN-17-0331. Cancer Res. 2017. PMID: 29092937 Free PMC article.
31 results