U01 GM102098/GM/NIGMS NIH HHS/United States[Grants and Funding] - Search Results

Year	Number of Results
2012	4
2013	11
2014	4
2015	4
2016	4
2017	6
2018	4
2019	1
2020	2
2023	1
2024	0

1

Modeling the multi-scale mechanisms of macromolecular resource allocation.

Yang L, Yurkovich JT, King ZA, Palsson BO. Yang L, et al. Curr Opin Microbiol. 2018 Oct;45:8-15. doi: 10.1016/j.mib.2018.01.002. Epub 2018 Jan 24. Curr Opin Microbiol. 2018. PMID: 29367175 Free PMC article. Review.

2

Computing the functional proteome: recent progress and future prospects for genome-scale models.

O'Brien EJ, Palsson BO. O'Brien EJ, et al. Curr Opin Biotechnol. 2015 Aug;34:125-34. doi: 10.1016/j.copbio.2014.12.017. Epub 2015 Jan 8. Curr Opin Biotechnol. 2015. PMID: 25576845 Free PMC article. Review.

3

ChIP-exo interrogation of Crp, DNA, and RNAP holoenzyme interactions.

Latif H, Federowicz S, Ebrahim A, Tarasova J, Szubin R, Utrilla J, Zengler K, Palsson BO. Latif H, et al. PLoS One. 2018 May 17;13(5):e0197272. doi: 10.1371/journal.pone.0197272. eCollection 2018. PLoS One. 2018. PMID: 29771928 Free PMC article.

4

Thermosensitivity of growth is determined by chaperone-mediated proteome reallocation.

Chen K, Gao Y, Mih N, O'Brien EJ, Yang L, Palsson BO. Chen K, et al. Proc Natl Acad Sci U S A. 2017 Oct 24;114(43):11548-11553. doi: 10.1073/pnas.1705524114. Epub 2017 Oct 10. Proc Natl Acad Sci U S A. 2017. PMID: 29073085 Free PMC article.

5

solveME: fast and reliable solution of nonlinear ME models.

Yang L, Ma D, Ebrahim A, Lloyd CJ, Saunders MA, Palsson BO. Yang L, et al. BMC Bioinformatics. 2016 Sep 22;17(1):391. doi: 10.1186/s12859-016-1240-1. BMC Bioinformatics. 2016. PMID: 27659412 Free PMC article.

6

A biochemically-interpretable machine learning classifier for microbial GWAS.

Kavvas ES, Yang L, Monk JM, Heckmann D, Palsson BO. Kavvas ES, et al. Nat Commun. 2020 May 22;11(1):2580. doi: 10.1038/s41467-020-16310-9. Nat Commun. 2020. PMID: 32444610 Free PMC article.

7

Visualizing metabolic network dynamics through time-series metabolomic data.

Buchweitz LF, Yurkovich JT, Blessing C, Kohler V, Schwarzkopf F, King ZA, Yang L, Jóhannsson F, Sigurjónsson ÓE, Rolfsson Ó, Heinrich J, Dräger A. Buchweitz LF, et al. BMC Bioinformatics. 2020 Apr 3;21(1):130. doi: 10.1186/s12859-020-3415-z. BMC Bioinformatics. 2020. PMID: 32245365 Free PMC article.

8

Reliable and efficient solution of genome-scale models of Metabolism and macromolecular Expression.

Ma D, Yang L, Fleming RM, Thiele I, Palsson BO, Saunders MA. Ma D, et al. Sci Rep. 2017 Jan 18;7:40863. doi: 10.1038/srep40863. Sci Rep. 2017. PMID: 28098205 Free PMC article.

9

COBRApy: COnstraints-Based Reconstruction and Analysis for Python.

Ebrahim A, Lerman JA, Palsson BO, Hyduke DR. Ebrahim A, et al. BMC Syst Biol. 2013 Aug 8;7:74. doi: 10.1186/1752-0509-7-74. BMC Syst Biol. 2013. PMID: 23927696 Free PMC article.

10

Model-driven experimental design workflow expands understanding of regulatory role of Nac in Escherichia coli.

Park JY, Lee SM, Ebrahim A, Scott-Nevros ZK, Kim J, Yang L, Sastry A, Seo SW, Palsson BO, Kim D. Park JY, et al. NAR Genom Bioinform. 2023 Jan 20;5(1):lqad006. doi: 10.1093/nargab/lqad006. eCollection 2023 Mar. NAR Genom Bioinform. 2023. PMID: 36685725 Free PMC article.

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