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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1980 1
1990 1
1992 1
1995 1
1998 2
2001 1
2003 1
2004 2
2005 4
2006 6
2007 6
2008 5
2009 6
2010 5
2011 5
2012 15
2013 14
2014 33
2015 36
2016 38
2017 71
2018 80
2019 88
2020 129
2021 148
2022 129
2023 125
2024 55

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891 results

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Page 1
Lineage tracing reveals the phylodynamics, plasticity, and paths of tumor evolution.
Yang D, Jones MG, Naranjo S, Rideout WM 3rd, Min KHJ, Ho R, Wu W, Replogle JM, Page JL, Quinn JJ, Horns F, Qiu X, Chen MZ, Freed-Pastor WA, McGinnis CS, Patterson DM, Gartner ZJ, Chow ED, Bivona TG, Chan MM, Yosef N, Jacks T, Weissman JS. Yang D, et al. Cell. 2022 May 26;185(11):1905-1923.e25. doi: 10.1016/j.cell.2022.04.015. Epub 2022 May 5. Cell. 2022. PMID: 35523183 Free PMC article.
Mechanical computing.
Yasuda H, Buskohl PR, Gillman A, Murphey TD, Stepney S, Vaia RA, Raney JR. Yasuda H, et al. Nature. 2021 Oct;598(7879):39-48. doi: 10.1038/s41586-021-03623-y. Epub 2021 Oct 6. Nature. 2021. PMID: 34616053 Review.
More recently, electronic forms of computation and information processing have overtaken these mechanical forms, owing to better potential for miniaturization and integration. However, several unconventional computing approaches have recently been introduced, …
More recently, electronic forms of computation and information processing have overtaken these mechanical forms, owing to bett …
A computational framework to explore large-scale biosynthetic diversity.
Navarro-Muñoz JC, Selem-Mojica N, Mullowney MW, Kautsar SA, Tryon JH, Parkinson EI, De Los Santos ELC, Yeong M, Cruz-Morales P, Abubucker S, Roeters A, Lokhorst W, Fernandez-Guerra A, Cappelini LTD, Goering AW, Thomson RJ, Metcalf WW, Kelleher NL, Barona-Gomez F, Medema MH. Navarro-Muñoz JC, et al. Nat Chem Biol. 2020 Jan;16(1):60-68. doi: 10.1038/s41589-019-0400-9. Epub 2019 Nov 25. Nat Chem Biol. 2020. PMID: 31768033 Free PMC article.
However, no bioinformatic framework is currently available for effectively analyzing datasets of this size and complexity. In the present study, a streamlined computational workflow is provided, consisting of two new software tools: the 'biosynthetic gene similarity cluste …
However, no bioinformatic framework is currently available for effectively analyzing datasets of this size and complexity. In the present st …
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.
Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, Brown CT, Callahan BJ, Caraballo-Rodríguez AM, Chase J, Cope EK, Da Silva R, Diener C, Dorrestein PC, Douglas GM, Durall DM, Duvallet C, Edwardson CF, Ernst M, Estaki M, Fouquier J, Gauglitz JM, Gibbons SM, Gibson DL, Gonzalez A, Gorlick K, Guo J, Hillmann B, Holmes S, Holste H, Huttenhower C, Huttley GA, Janssen S, Jarmusch AK, Jiang L, Kaehler BD, Kang KB, Keefe CR, Keim P, Kelley ST, Knights D, Koester I, Kosciolek T, Kreps J, Langille MGI, Lee J, Ley R, Liu YX, Loftfield E, Lozupone C, Maher M, Marotz C, Martin BD, McDonald D, McIver LJ, Melnik AV, Metcalf JL, Morgan SC, Morton JT, Naimey AT, Navas-Molina JA, Nothias LF, Orchanian SB, Pearson T, Peoples SL, Petras D, Preuss ML, Pruesse E, Rasmussen LB, Rivers A, Robeson MS 2nd, Rosenthal P, Segata N, Shaffer M, Shiffer A, Sinha R, Song SJ, Spear JR, Swafford AD, Thompson LR, Torres PJ, Trinh P, Tripathi A, Turnbaugh PJ, Ul-Hasan S, van der Hooft JJJ, Vargas F, Vázquez-Baeza Y, Vogtmann E, von Hippel M, Walters W, Wan Y, Wang M, Warren J, Weber KC, Williamson … See abstract for full author list ➔ Bolyen E, et al. Nat Biotechnol. 2019 Aug;37(8):852-857. doi: 10.1038/s41587-019-0209-9. Nat Biotechnol. 2019. PMID: 31341288 Free PMC article. No abstract available.
Protein design meets biosecurity.
Baker D, Church G. Baker D, et al. Science. 2024 Jan 26;383(6681):349. doi: 10.1126/science.ado1671. Epub 2024 Jan 25. Science. 2024. PMID: 38271530
The power and accuracy of computational protein design have been increasing rapidly with the incorporation of artificial intelligence (AI) approaches. ...
The power and accuracy of computational protein design have been increasing rapidly with the incorporation of artificial intelligence …
Unraveling the functional dark matter through global metagenomics.
Pavlopoulos GA, Baltoumas FA, Liu S, Selvitopi O, Camargo AP, Nayfach S, Azad A, Roux S, Call L, Ivanova NN, Chen IM, Paez-Espino D, Karatzas E; Novel Metagenome Protein Families Consortium; Iliopoulos I, Konstantinidis K, Tiedje JM, Pett-Ridge J, Baker D, Visel A, Ouzounis CA, Ovchinnikov S, Buluç A, Kyrpides NC. Pavlopoulos GA, et al. Nature. 2023 Oct;622(7983):594-602. doi: 10.1038/s41586-023-06583-7. Epub 2023 Oct 11. Nature. 2023. PMID: 37821698 Free PMC article.
Here, to examine the scale of yet untapped functional diversity beyond what is currently possible through the lens of reference genomes, we develop a computational approach to generate reference-free protein families from the sequence space in metagenomes. ...
Here, to examine the scale of yet untapped functional diversity beyond what is currently possible through the lens of reference genomes, we …
In Silico Models for Hepatotoxicity.
Ellison C, Hewitt M, Przybylak K. Ellison C, et al. Methods Mol Biol. 2022;2425:355-392. doi: 10.1007/978-1-0716-1960-5_14. Methods Mol Biol. 2022. PMID: 35188639 Review.
The normative modeling framework for computational psychiatry.
Rutherford S, Kia SM, Wolfers T, Fraza C, Zabihi M, Dinga R, Berthet P, Worker A, Verdi S, Ruhe HG, Beckmann CF, Marquand AF. Rutherford S, et al. Nat Protoc. 2022 Jul;17(7):1711-1734. doi: 10.1038/s41596-022-00696-5. Epub 2022 Jun 1. Nat Protoc. 2022. PMID: 35650452 Free PMC article. Review.
It involves charting centiles of variation across a population in terms of mappings between biology and behavior, which can then be used to make statistical inferences at the level of the individual. The fields of computational psychiatry and clinical neuroscience have bee …
It involves charting centiles of variation across a population in terms of mappings between biology and behavior, which can then be used to …
An open chat with…Takashi Gojobori.
Wright D, Gojobori T. Wright D, et al. FEBS Open Bio. 2022 Feb;12(2):338-339. doi: 10.1002/2211-5463.13354. Epub 2022 Jan 17. FEBS Open Bio. 2022. PMID: 34929070 Free PMC article.
Takashi Gojobori received his doctorate at Kyushu University, Japan, before joining the University of Texas Health Science Center as a Research Associate and then Research Assistant Professor. Takashi was formerly the Vice-Director and Professor of National Institut …
Takashi Gojobori received his doctorate at Kyushu University, Japan, before joining the University of Texas Health Science Center as …
891 results