Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

Filters

My NCBI Filters

Results by year

Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2018 2
2019 4
2020 9
2021 8
2022 9
2023 4
2024 3

Text availability

Article attribute

Article type

Publication date

Search Results

38 results

Results by year

Filters applied: . Clear all
Page 1
Maximum likelihood pandemic-scale phylogenetics.
De Maio N, Kalaghatgi P, Turakhia Y, Corbett-Detig R, Minh BQ, Goldman N. De Maio N, et al. bioRxiv [Preprint]. 2022 Jul 18:2022.03.22.485312. doi: 10.1101/2022.03.22.485312. bioRxiv. 2022. PMID: 35350209 Free PMC article. Updated. Preprint.
Maximum likelihood pandemic-scale phylogenetics.
De Maio N, Kalaghatgi P, Turakhia Y, Corbett-Detig R, Minh BQ, Goldman N. De Maio N, et al. Nat Genet. 2023 May;55(5):746-752. doi: 10.1038/s41588-023-01368-0. Epub 2023 Apr 10. Nat Genet. 2023. PMID: 37038003 Free PMC article.
Stability of SARS-CoV-2 phylogenies.
Turakhia Y, De Maio N, Thornlow B, Gozashti L, Lanfear R, Walker CR, Hinrichs AS, Fernandes JD, Borges R, Slodkowicz G, Weilguny L, Haussler D, Goldman N, Corbett-Detig R. Turakhia Y, et al. PLoS Genet. 2020 Nov 18;16(11):e1009175. doi: 10.1371/journal.pgen.1009175. eCollection 2020 Nov. PLoS Genet. 2020. PMID: 33206635 Free PMC article.
Inferring Adaptive Introgression Using Hidden Markov Models.
Svedberg J, Shchur V, Reinman S, Nielsen R, Corbett-Detig R. Svedberg J, et al. Mol Biol Evol. 2021 May 4;38(5):2152-2165. doi: 10.1093/molbev/msab014. Mol Biol Evol. 2021. PMID: 33502512 Free PMC article.
The UCSC SARS-CoV-2 Genome Browser.
Fernandes JD, Hinrichs AS, Clawson H, Gonzalez JN, Lee BT, Nassar LR, Raney BJ, Rosenbloom KR, Nerli S, Rao AA, Schmelter D, Fyfe A, Maulding N, Zweig AS, Lowe TM, Ares M Jr, Corbet-Detig R, Kent WJ, Haussler D, Haeussler M. Fernandes JD, et al. Nat Genet. 2020 Oct;52(10):991-998. doi: 10.1038/s41588-020-0700-8. Nat Genet. 2020. PMID: 32908258 Free PMC article.
Inferring multi-locus selection in admixed populations.
Ayala NM, Genetti M, Corbett-Detig R. Ayala NM, et al. PLoS Genet. 2023 Nov 28;19(11):e1011062. doi: 10.1371/journal.pgen.1011062. eCollection 2023 Nov. PLoS Genet. 2023. PMID: 38015992 Free PMC article.
Pandemic-scale phylogenomics reveals the SARS-CoV-2 recombination landscape.
Turakhia Y, Thornlow B, Hinrichs A, McBroome J, Ayala N, Ye C, Smith K, De Maio N, Haussler D, Lanfear R, Corbett-Detig R. Turakhia Y, et al. Nature. 2022 Sep;609(7929):994-997. doi: 10.1038/s41586-022-05189-9. Epub 2022 Aug 11. Nature. 2022. PMID: 35952714 Free PMC article.
VGsim: Scalable viral genealogy simulator for global pandemic.
Shchur V, Spirin V, Sirotkin D, Burovski E, De Maio N, Corbett-Detig R. Shchur V, et al. PLoS Comput Biol. 2022 Aug 24;18(8):e1010409. doi: 10.1371/journal.pcbi.1010409. eCollection 2022 Aug. PLoS Comput Biol. 2022. PMID: 36001646 Free PMC article.
38 results