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Best practices for single-cell analysis across modalities.
Heumos L, Schaar AC, Lance C, Litinetskaya A, Drost F, Zappia L, Lücken MD, Strobl DC, Henao J, Curion F; Single-cell Best Practices Consortium; Schiller HB, Theis FJ. Heumos L, et al. Nat Rev Genet. 2023 Aug;24(8):550-572. doi: 10.1038/s41576-023-00586-w. Epub 2023 Mar 31. Nat Rev Genet. 2023. PMID: 37002403 Free PMC article. Review.
Fluent genomics with  plyranges and  tximeta.
Lee S, Lawrence M, Love MI. Lee S, et al. F1000Res. 2020 Feb 12;9:109. doi: 10.12688/f1000research.22259.1. eCollection 2020. F1000Res. 2020. PMID: 32528659 Free PMC article.
Plotgardener: cultivating precise multi-panel figures in R.
Kramer NE, Davis ES, Wenger CD, Deoudes EM, Parker SM, Love MI, Phanstiel DH. Kramer NE, et al. Bioinformatics. 2022 Mar 28;38(7):2042-2045. doi: 10.1093/bioinformatics/btac057. Bioinformatics. 2022. PMID: 35134826 Free PMC article.
Compression of quantification uncertainty for scRNA-seq counts.
Van Buren S, Sarkar H, Srivastava A, Rashid NU, Patro R, Love MI. Van Buren S, et al. Bioinformatics. 2021 Jul 19;37(12):1699-1707. doi: 10.1093/bioinformatics/btab001. Bioinformatics. 2021. PMID: 33471073 Free PMC article.
54 results