R01 HG009663/HG/NHGRI NIH HHS/United States[Grants and Funding] - Search Results

Year	Number of Results
2017	1
2018	3
2019	3
2020	2
2021	6
2023	1
2024	0

1

Direct Promoter Repression by BCL11A Controls the Fetal to Adult Hemoglobin Switch.

Liu N, Hargreaves VV, Zhu Q, Kurland JV, Hong J, Kim W, Sher F, Macias-Trevino C, Rogers JM, Kurita R, Nakamura Y, Yuan GC, Bauer DE, Xu J, Bulyk ML, Orkin SH. Liu N, et al. Cell. 2018 Apr 5;173(2):430-442.e17. doi: 10.1016/j.cell.2018.03.016. Epub 2018 Mar 29. Cell. 2018. PMID: 29606353 Free PMC article.

2

Distinct Mesenchymal Cell Populations Generate the Essential Intestinal BMP Signaling Gradient.

McCarthy N, Manieri E, Storm EE, Saadatpour A, Luoma AM, Kapoor VN, Madha S, Gaynor LT, Cox C, Keerthivasan S, Wucherpfennig K, Yuan GC, de Sauvage FJ, Turley SJ, Shivdasani RA. McCarthy N, et al. Cell Stem Cell. 2020 Mar 5;26(3):391-402.e5. doi: 10.1016/j.stem.2020.01.008. Epub 2020 Feb 20. Cell Stem Cell. 2020. PMID: 32084389 Free PMC article.

3

Transcription factor competition at the γ-globin promoters controls hemoglobin switching.

Liu N, Xu S, Yao Q, Zhu Q, Kai Y, Hsu JY, Sakon P, Pinello L, Yuan GC, Bauer DE, Orkin SH. Liu N, et al. Nat Genet. 2021 Apr;53(4):511-520. doi: 10.1038/s41588-021-00798-y. Epub 2021 Mar 1. Nat Genet. 2021. PMID: 33649594 Free PMC article.

4

CUT&RUNTools 2.0: a pipeline for single-cell and bulk-level CUT&RUN and CUT&Tag data analysis.

Yu F, Sankaran VG, Yuan GC. Yu F, et al. Bioinformatics. 2021 Dec 22;38(1):252-254. doi: 10.1093/bioinformatics/btab507. Bioinformatics. 2021. PMID: 34244724 Free PMC article.

5

Dissecting super-enhancer hierarchy based on chromatin interactions.

Huang J, Li K, Cai W, Liu X, Zhang Y, Orkin SH, Xu J, Yuan GC. Huang J, et al. Nat Commun. 2018 Mar 5;9(1):943. doi: 10.1038/s41467-018-03279-9. Nat Commun. 2018. PMID: 29507293 Free PMC article.

6

Mapping the evolving landscape of super-enhancers during cell differentiation.

Kai Y, Li BE, Zhu M, Li GY, Chen F, Han Y, Cha HJ, Orkin SH, Cai W, Huang J, Yuan GC. Kai Y, et al. Genome Biol. 2021 Sep 15;22(1):269. doi: 10.1186/s13059-021-02485-x. Genome Biol. 2021. PMID: 34526084 Free PMC article.

7

Multi-scale chromatin state annotation using a hierarchical hidden Markov model.

Marco E, Meuleman W, Huang J, Glass K, Pinello L, Wang J, Kellis M, Yuan GC. Marco E, et al. Nat Commun. 2017 Apr 7;8:15011. doi: 10.1038/ncomms15011. Nat Commun. 2017. PMID: 28387224 Free PMC article.

8

Inner nuclear protein Matrin-3 coordinates cell differentiation by stabilizing chromatin architecture.

Cha HJ, Uyan Ö, Kai Y, Liu T, Zhu Q, Tothova Z, Botten GA, Xu J, Yuan GC, Dekker J, Orkin SH. Cha HJ, et al. Nat Commun. 2021 Oct 29;12(1):6241. doi: 10.1038/s41467-021-26574-4. Nat Commun. 2021. PMID: 34716321 Free PMC article.

9

Enhancer dependence of cell-type-specific gene expression increases with developmental age.

Cai W, Huang J, Zhu Q, Li BE, Seruggia D, Zhou P, Nguyen M, Fujiwara Y, Xie H, Yang Z, Hong D, Ren P, Xu J, Pu WT, Yuan GC, Orkin SH. Cai W, et al. Proc Natl Acad Sci U S A. 2020 Sep 1;117(35):21450-21458. doi: 10.1073/pnas.2008672117. Epub 2020 Aug 19. Proc Natl Acad Sci U S A. 2020. PMID: 32817427 Free PMC article.

10

A dynamic and integrated epigenetic program at distal regions orchestrates transcriptional responses to VEGFA.

Wang S, Chen J, Garcia SP, Liang X, Zhang F, Yan P, Yu H, Wei W, Li Z, Wang J, Le H, Han Z, Luo X, Day DS, Stevens SM, Zhang Y, Park PJ, Liu ZJ, Sun K, Yuan GC, Pu WT, Zhang B. Wang S, et al. Genome Res. 2019 Feb;29(2):193-207. doi: 10.1101/gr.239053.118. Epub 2019 Jan 22. Genome Res. 2019. PMID: 30670628 Free PMC article.

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