R01 HG006768/HG/NHGRI NIH HHS/United States[Grants and Funding] - Search Results

Year	Number of Results
2012	2
2013	8
2014	7
2015	4
2016	2
2017	4
2018	1
2019	3
2020	2
2024	0

1

Decoding enhancers using massively parallel reporter assays.

Inoue F, Ahituv N. Inoue F, et al. Genomics. 2015 Sep;106(3):159-164. doi: 10.1016/j.ygeno.2015.06.005. Epub 2015 Jun 10. Genomics. 2015. PMID: 26072433 Free PMC article. Review.

2

Minor Loops in Major Folds: Enhancer-Promoter Looping, Chromatin Restructuring, and Their Association with Transcriptional Regulation and Disease.

Matharu N, Ahituv N. Matharu N, et al. PLoS Genet. 2015 Dec 3;11(12):e1005640. doi: 10.1371/journal.pgen.1005640. eCollection 2015 Dec. PLoS Genet. 2015. PMID: 26632825 Free PMC article. Review.

3

ABCG2 regulatory single-nucleotide polymorphisms alter in vivo enhancer activity and expression.

Eclov RJ, Kim MJ, Chhibber A, Smith RP, Ahituv N, Kroetz DL. Eclov RJ, et al. Pharmacogenet Genomics. 2017 Dec;27(12):454-463. doi: 10.1097/FPC.0000000000000312. Pharmacogenet Genomics. 2017. PMID: 28930109 Free PMC article.

4

Functional characterization of SIM1-associated enhancers.

Kim MJ, Oksenberg N, Hoffmann TJ, Vaisse C, Ahituv N. Kim MJ, et al. Hum Mol Genet. 2014 Apr 1;23(7):1700-8. doi: 10.1093/hmg/ddt559. Epub 2013 Nov 7. Hum Mol Genet. 2014. PMID: 24203700 Free PMC article.

5

A systematic evaluation of the design and context dependencies of massively parallel reporter assays.

Klein JC, Agarwal V, Inoue F, Keith A, Martin B, Kircher M, Ahituv N, Shendure J. Klein JC, et al. Nat Methods. 2020 Nov;17(11):1083-1091. doi: 10.1038/s41592-020-0965-y. Epub 2020 Oct 12. Nat Methods. 2020. PMID: 33046894 Free PMC article.

6

Predicting mRNA Abundance Directly from Genomic Sequence Using Deep Convolutional Neural Networks.

Agarwal V, Shendure J. Agarwal V, et al. Cell Rep. 2020 May 19;31(7):107663. doi: 10.1016/j.celrep.2020.107663. Cell Rep. 2020. PMID: 32433972 Free article.

7

A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity.

Inoue F, Kircher M, Martin B, Cooper GM, Witten DM, McManus MT, Ahituv N, Shendure J. Inoue F, et al. Genome Res. 2017 Jan;27(1):38-52. doi: 10.1101/gr.212092.116. Epub 2016 Nov 9. Genome Res. 2017. PMID: 27831498 Free PMC article.

8

Integrating diverse datasets improves developmental enhancer prediction.

Erwin GD, Oksenberg N, Truty RM, Kostka D, Murphy KK, Ahituv N, Pollard KS, Capra JA. Erwin GD, et al. PLoS Comput Biol. 2014 Jun 26;10(6):e1003677. doi: 10.1371/journal.pcbi.1003677. eCollection 2014 Jun. PLoS Comput Biol. 2014. PMID: 24967590 Free PMC article.

9

In Vivo Hepatic Enhancer Elements in the Human ABCG2 Locus.

Eclov RJ, Kim MJ, Smith RP, Liang X, Ahituv N, Kroetz DL. Eclov RJ, et al. Drug Metab Dispos. 2017 Feb;45(2):208-215. doi: 10.1124/dmd.116.072033. Epub 2016 Nov 17. Drug Metab Dispos. 2017. PMID: 27856528 Free PMC article.

10

Functional testing of thousands of osteoarthritis-associated variants for regulatory activity.

Klein JC, Keith A, Rice SJ, Shepherd C, Agarwal V, Loughlin J, Shendure J. Klein JC, et al. Nat Commun. 2019 Jun 4;10(1):2434. doi: 10.1038/s41467-019-10439-y. Nat Commun. 2019. PMID: 31164647 Free PMC article.

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