R01 GM106056/GM/NIGMS NIH HHS/United States[Grants and Funding] - Search Results

Year	Number of Results
2014	4
2015	13
2016	6
2017	7
2018	6
2019	1
2020	5
2024	0

1

Toward a Mechanistic Understanding of DNA Methylation Readout by Transcription Factors.

Kribelbauer JF, Lu XJ, Rohs R, Mann RS, Bussemaker HJ. Kribelbauer JF, et al. J Mol Biol. 2020 Mar 13;432(6):1801-1815. doi: 10.1016/j.jmb.2019.10.021. Epub 2019 Nov 2. J Mol Biol. 2020. PMID: 31689433 Free PMC article. Review.

2

How motif environment influences transcription factor search dynamics: Finding a needle in a haystack.

Dror I, Rohs R, Mandel-Gutfreund Y. Dror I, et al. Bioessays. 2016 Jul;38(7):605-12. doi: 10.1002/bies.201600005. Epub 2016 May 19. Bioessays. 2016. PMID: 27192961 Free PMC article. Review.

3

DNAproDB: an interactive tool for structural analysis of DNA-protein complexes.

Sagendorf JM, Berman HM, Rohs R. Sagendorf JM, et al. Nucleic Acids Res. 2017 Jul 3;45(W1):W89-W97. doi: 10.1093/nar/gkx272. Nucleic Acids Res. 2017. PMID: 28431131 Free PMC article.

4

Absence of a simple code: how transcription factors read the genome.

Slattery M, Zhou T, Yang L, Dantas Machado AC, Gordân R, Rohs R. Slattery M, et al. Trends Biochem Sci. 2014 Sep;39(9):381-99. doi: 10.1016/j.tibs.2014.07.002. Epub 2014 Aug 14. Trends Biochem Sci. 2014. PMID: 25129887 Free PMC article. Review.

5

Evolving insights on how cytosine methylation affects protein-DNA binding.

Dantas Machado AC, Zhou T, Rao S, Goel P, Rastogi C, Lazarovici A, Bussemaker HJ, Rohs R. Dantas Machado AC, et al. Brief Funct Genomics. 2015 Jan;14(1):61-73. doi: 10.1093/bfgp/elu040. Epub 2014 Oct 14. Brief Funct Genomics. 2015. PMID: 25319759 Free PMC article. Review.

6

Mechanistic insights into metal ion activation and operator recognition by the ferric uptake regulator.

Deng Z, Wang Q, Liu Z, Zhang M, Machado AC, Chiu TP, Feng C, Zhang Q, Yu L, Qi L, Zheng J, Wang X, Huo X, Qi X, Li X, Wu W, Rohs R, Li Y, Chen Z. Deng Z, et al. Nat Commun. 2015 Jul 2;6:7642. doi: 10.1038/ncomms8642. Nat Commun. 2015. PMID: 26134419 Free PMC article.

7

TFBSshape: an expanded motif database for DNA shape features of transcription factor binding sites.

Chiu TP, Xin B, Markarian N, Wang Y, Rohs R. Chiu TP, et al. Nucleic Acids Res. 2020 Jan 8;48(D1):D246-D255. doi: 10.1093/nar/gkz970. Nucleic Acids Res. 2020. PMID: 31665425 Free PMC article.

8

CRISPR-Cas9 Mediated DNA Unwinding Detected Using Site-Directed Spin Labeling.

Tangprasertchai NS, Di Felice R, Zhang X, Slaymaker IM, Vazquez Reyes C, Jiang W, Rohs R, Qin PZ. Tangprasertchai NS, et al. ACS Chem Biol. 2017 Jun 16;12(6):1489-1493. doi: 10.1021/acschembio.6b01137. Epub 2017 May 3. ACS Chem Biol. 2017. PMID: 28437608 Free PMC article.

9

Epigenetic stress responses induce muscle stem-cell ageing by Hoxa9 developmental signals.

Schwörer S, Becker F, Feller C, Baig AH, Köber U, Henze H, Kraus JM, Xin B, Lechel A, Lipka DB, Varghese CS, Schmidt M, Rohs R, Aebersold R, Medina KL, Kestler HA, Neri F, von Maltzahn J, Tümpel S, Rudolph KL. Schwörer S, et al. Nature. 2016 Dec 15;540(7633):428-432. doi: 10.1038/nature20603. Epub 2016 Nov 30. Nature. 2016. PMID: 27919074 Free PMC article.

10

DNAproDB: an expanded database and web-based tool for structural analysis of DNA-protein complexes.

Sagendorf JM, Markarian N, Berman HM, Rohs R. Sagendorf JM, et al. Nucleic Acids Res. 2020 Jan 8;48(D1):D277-D287. doi: 10.1093/nar/gkz889. Nucleic Acids Res. 2020. PMID: 31612957 Free PMC article.

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