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A comprehensive revisit of the machine-learning tools developed for the identification of enhancers in the human genome.
Proteomics. 2023 Jul;23(13-14):e2200409. doi: 10.1002/pmic.202200409. Epub 2023 Jun 7.
Proteomics. 2023.
PMID: 37021401
Review.
Advancing the accuracy of SARS-CoV-2 phosphorylation site detection via meta-learning approach.
Pham NT, Phan LT, Seo J, Kim Y, Song M, Lee S, Jeon YJ, Manavalan B.
Pham NT, et al.
Brief Bioinform. 2023 Nov 22;25(1):bbad433. doi: 10.1093/bib/bbad433.
Brief Bioinform. 2023.
PMID: 38058187
Free PMC article.
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SiameseCPP: a sequence-based Siamese network to predict cell-penetrating peptides by contrastive learning.
Zhang X, Wei L, Ye X, Zhang K, Teng S, Li Z, Jin J, Kim MJ, Sakurai T, Cui L, Manavalan B, Wei L.
Zhang X, et al.
Brief Bioinform. 2023 Jan 19;24(1):bbac545. doi: 10.1093/bib/bbac545.
Brief Bioinform. 2023.
PMID: 36562719
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H2Opred: a robust and efficient hybrid deep learning model for predicting 2'-O-methylation sites in human RNA.
Pham NT, Rakkiyapan R, Park J, Malik A, Manavalan B.
Pham NT, et al.
Brief Bioinform. 2023 Nov 22;25(1):bbad476. doi: 10.1093/bib/bbad476.
Brief Bioinform. 2023.
PMID: 38180830
Free PMC article.
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