Exploring the Healthy Eye Microbiota Niche in a Multicenter Study

Int J Mol Sci. 2022 Sep 6;23(18):10229. doi: 10.3390/ijms231810229.

Abstract

Purpose: This study aims to explore and characterize healthy eye microbiota.

Methods: Healthy subjects older than 18 years were selected for this descriptive cross-sectional study. Samples were collected with an eSwab with 1 mL of Liquid Amies Medium (Copan Brescia, Italy). Following DNA extraction, libraries preparation, and amplification, PCR products were purified and end-repaired for barcode ligation. Libraries were pooled to a final concentration of 26 pM. Template preparation was performed with Ion Chef according to Ion 510, Ion 520, and Ion 530 Kit-Chef protocol. Sequencing of the amplicon libraries was carried out on a 520 or 530 chip using the Ion Torrent S5 system (Thermo Fisher; Waltham, MA, USA). Raw reads were analyzed with GAIA (v 2.02).

Results: Healthy eye microbiota is a low-diversity microbiome. The vast majority of the 137 analyzed samples were highly enriched with Staphylococcus, whereas only in a few of them, other genera such as Bacillus, Pseudomonas, and Corynebacterium predominate. We found an average of 88 genera with an average Shannon index of 0.65.

Conclusion: We identified nine different ECSTs. A better understanding of healthy eye microbiota has the potential to improve disease diagnosis and personalized regimens to promote health.

Keywords: 16; OSDI; eye; healthy; metagenomics; microbiome.

Publication types

  • Multicenter Study

MeSH terms

  • Cross-Sectional Studies
  • DNA
  • Health Promotion*
  • High-Throughput Nucleotide Sequencing / methods
  • Humans
  • Microbiota* / genetics
  • RNA, Ribosomal, 16S / genetics

Substances

  • RNA, Ribosomal, 16S
  • DNA

Grants and funding

This research received no external funding.