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Page 1
Computational Methods for Strain-Level Microbial Detection in Colony and Metagenome Sequencing Data.
Front Microbiol. 2020 Aug 18;11:1925. doi: 10.3389/fmicb.2020.01925. eCollection 2020.
Front Microbiol. 2020.
PMID: 33013732
Free PMC article.
Review.
An educational guide for nanopore sequencing in the classroom.
Salazar AN, Nobrega FL, Anyansi C, Aparicio-Maldonado C, Costa AR, Haagsma AC, Hiralal A, Mahfouz A, McKenzie RE, van Rossum T, Brouns SJJ, Abeel T.
Salazar AN, et al. Among authors: anyansi c.
PLoS Comput Biol. 2020 Jan 23;16(1):e1007314. doi: 10.1371/journal.pcbi.1007314. eCollection 2020 Jan.
PLoS Comput Biol. 2020.
PMID: 31971941
Free PMC article.
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StrainGE: a toolkit to track and characterize low-abundance strains in complex microbial communities.
van Dijk LR, Walker BJ, Straub TJ, Worby CJ, Grote A, Schreiber HL 4th, Anyansi C, Pickering AJ, Hultgren SJ, Manson AL, Abeel T, Earl AM.
van Dijk LR, et al. Among authors: anyansi c.
Genome Biol. 2022 Mar 7;23(1):74. doi: 10.1186/s13059-022-02630-0.
Genome Biol. 2022.
PMID: 35255937
Free PMC article.
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REViewer: haplotype-resolved visualization of read alignments in and around tandem repeats.
Dolzhenko E, Weisburd B, Ibañez K, Rajan-Babu IS, Anyansi C, Bennett MF, Billingsley K, Carroll A, Clamons S, Danzi MC, Deshpande V, Ding J, Fazal S, Halman A, Jadhav B, Qiu Y, Richmond PA, Saunders CT, Scheffler K, van Vugt JJFA, Zwamborn RRAJ; Genomics England Research Consortium; Chong SS, Friedman JM, Tucci A, Rehm HL, Eberle MA.
Dolzhenko E, et al. Among authors: anyansi c.
Genome Med. 2022 Aug 11;14(1):84. doi: 10.1186/s13073-022-01085-z.
Genome Med. 2022.
PMID: 35948990
Free PMC article.
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QuantTB - a method to classify mixed Mycobacterium tuberculosis infections within whole genome sequencing data.
Anyansi C, Keo A, Walker BJ, Straub TJ, Manson AL, Earl AM, Abeel T.
Anyansi C, et al.
BMC Genomics. 2020 Jan 28;21(1):80. doi: 10.1186/s12864-020-6486-3.
BMC Genomics. 2020.
PMID: 31992201
Free PMC article.
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Reconstruction of enhancer-target networks in 935 samples of human primary cells, tissues and cell lines.
Cao Q, Anyansi C, Hu X, Xu L, Xiong L, Tang W, Mok MTS, Cheng C, Fan X, Gerstein M, Cheng ASL, Yip KY.
Cao Q, et al. Among authors: anyansi c.
Nat Genet. 2017 Oct;49(10):1428-1436. doi: 10.1038/ng.3950. Epub 2017 Sep 4.
Nat Genet. 2017.
PMID: 28869592
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