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Hidden species diversity in Pachyhynobius: A multiple approaches species delimitation with mitogenomes.
Pan T, Sun Z, Lai X, Orozcoterwengel P, Yan P, Wu G, Wang H, Zhu W, Wu X, Zhang B. Pan T, et al. Mol Phylogenet Evol. 2019 Aug;137:138-145. doi: 10.1016/j.ympev.2019.05.005. Epub 2019 May 11. Mol Phylogenet Evol. 2019. PMID: 31085325
In this study, we used the complete mitochondrial genome data and samples from the entire range of stout salamander (Pachyhynobius), as well as publicly available mitochondrial genomes to assess species boundaries within this genus using a suite of diverse methodologies (e.g. gen …
In this study, we used the complete mitochondrial genome data and samples from the entire range of stout salamander (Pachyhynobius), as well …
Evolutionary history of chimpanzees inferred from complete mitochondrial genomes.
Bjork A, Liu W, Wertheim JO, Hahn BH, Worobey M. Bjork A, et al. Mol Biol Evol. 2011 Jan;28(1):615-23. doi: 10.1093/molbev/msq227. Epub 2010 Aug 28. Mol Biol Evol. 2011. PMID: 20802239 Free PMC article.
Investigations into the evolutionary history of the common chimpanzee, Pan troglodytes, have produced inconsistent results due to differences in the types of molecular data considered, the model assumptions employed, and the quantity and geographical range of samples used. …
Investigations into the evolutionary history of the common chimpanzee, Pan troglodytes, have produced inconsistent results due to dif …
Targeting the ATP-dependent formation of herpesvirus ribonucleoprotein particle assembly as an antiviral approach.
Schumann S, Jackson BR, Yule I, Whitehead SK, Revill C, Foster R, Whitehouse A. Schumann S, et al. Nat Microbiol. 2016 Oct 31;2:16201. doi: 10.1038/nmicrobiol.2016.201. Nat Microbiol. 2016. PMID: 27798559 Free article.
Strikingly, as all human herpesviruses use conserved mRNA processing pathways involving hTREX components, we demonstrate the feasibility of this approach for pan-herpesvirus inhibition....
Strikingly, as all human herpesviruses use conserved mRNA processing pathways involving hTREX components, we demonstrate the feasibility of …
Phylogenetics and species delimitations of the operculated land snail Cyclophorus volvulus (Gastropoda: Cyclophoridae) reveal cryptic diversity and new species in Thailand.
Nantarat N, Sutcharit C, Tongkerd P, Wade CM, Naggs F, Panha S. Nantarat N, et al. Sci Rep. 2019 May 7;9(1):7041. doi: 10.1038/s41598-019-43382-5. Sci Rep. 2019. PMID: 31065003 Free PMC article.
Moreover, three species delimitation analyses were applied: Poisson tree processes (PTP), automatic barcode gap discovery (ABGD), and generalized mixed Yule-coalescent (GMYC). All phylogenetic trees revealed that C. volvulus was polyphyletic and comprised of three clades t …
Moreover, three species delimitation analyses were applied: Poisson tree processes (PTP), automatic barcode gap discovery (ABGD), and genera …
Leapfrogging into new territory: How Mascarene ridged frogs diversified across Africa and Madagascar to maintain their ecological niche.
Zimkus BM, Lawson LP, Barej MF, Barratt CD, Channing A, Dash KM, Dehling JM, Du Preez L, Gehring PS, Greenbaum E, Gvoždík V, Harvey J, Kielgast J, Kusamba C, Nagy ZT, Pabijan M, Penner J, Rödel MO, Vences M, Lötters S. Zimkus BM, et al. Mol Phylogenet Evol. 2017 Jan;106:254-269. doi: 10.1016/j.ympev.2016.09.018. Epub 2016 Sep 21. Mol Phylogenet Evol. 2017. PMID: 27664344 Free article.
Haplotype networks were reconstructed and species boundaries were investigated using three species-delimitation approaches: Bayesian generalized mixed Yule-coalescent model (bGMYC), the Poisson Tree Process model (PTP) and a cluster algorithm (SpeciesIdentifier). ...
Haplotype networks were reconstructed and species boundaries were investigated using three species-delimitation approaches: Bayesian general …