Employing phylogenetic tree shape statistics to resolve the underlying host population structure.
Kayondo HW, Ssekagiri A, Nabakooza G, Bbosa N, Ssemwanga D, Kaleebu P, Mwalili S, Mango JM, Leigh Brown AJ, Saenz RA, Galiwango R, Kitayimbwa JM.
Kayondo HW, et al.
BMC Bioinformatics. 2021 Nov 10;22(1):546. doi: 10.1186/s12859-021-04465-1.
BMC Bioinformatics. 2021.
PMID: 34758743
Free PMC article.
CONCLUSIONS: Our classification procedure distinguishes well between trees from structured and non-structured populations using the classifiers, the two-sample Kolmogorov-Smirnov, Cucconi and Podgor-Gastwirth tests and the box plots. SVM models were more robust to changes …
CONCLUSIONS: Our classification procedure distinguishes well between trees from structured and non-structured populations using the classifi …