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simpiTB - a pipeline designed to extract meaningful information from whole genome sequencing data of Mycobacterium tuberculosis complex, allows to combine genomic, phylogenetic and clustering analyses in existing SITVIT databases.
Infect Genet Evol. 2023 Sep;113:105466. doi: 10.1016/j.meegid.2023.105466. Epub 2023 Jun 16.
Infect Genet Evol. 2023.
PMID: 37331497
Free article.
KaruBioNet: a network and discussion group for a better collaboration and structuring of bioinformatics in Guadeloupe (French West Indies).
Couvin D, Dereeper A, Meyer DF, Noroy C, Gaete S, Bhakkan B, Poullet N, Gaspard S, Bezault E, Marcelino I, Pruneau L, Segretier W, Stattner E, Cazenave D, Garnier M, Pot M, Tressières B, Deloumeaux J, Breurec S, Ferdinand S, Gonzalez-Rizzo S, Reynaud Y.
Couvin D, et al. Among authors: segretier w.
Bioinform Adv. 2022 Feb 18;2(1):vbac010. doi: 10.1093/bioadv/vbac010. eCollection 2022.
Bioinform Adv. 2022.
PMID: 36699379
Free PMC article.
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Novel methods included in SpolLineages tool for fast and precise prediction of Mycobacterium tuberculosis complex spoligotype families.
Couvin D, Segretier W, Stattner E, Rastogi N.
Couvin D, et al. Among authors: segretier w.
Database (Oxford). 2020 Dec 15;2020:baaa108. doi: 10.1093/database/baaa108.
Database (Oxford). 2020.
PMID: 33320180
Free PMC article.
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