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Computational Metabolomics Operations at BioCyc.org.
Karp PD, Billington R, Holland TA, Kothari A, Krummenacker M, Weaver D, Latendresse M, Paley S. Karp PD, et al. Among authors: holland ta. Metabolites. 2015 May 22;5(2):291-310. doi: 10.3390/metabo5020291. Metabolites. 2015. PMID: 26011592 Free PMC article.
Groups: knowledge spreadsheets for symbolic biocomputing.
Travers M, Paley SM, Shrager J, Holland TA, Karp PD. Travers M, et al. Among authors: holland ta. Database (Oxford). 2013 Sep 14;2013:bat061. doi: 10.1093/database/bat061. Print 2013. Database (Oxford). 2013. PMID: 24037025 Free PMC article.
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.
Caspi R, Altman T, Billington R, Dreher K, Foerster H, Fulcher CA, Holland TA, Keseler IM, Kothari A, Kubo A, Krummenacker M, Latendresse M, Mueller LA, Ong Q, Paley S, Subhraveti P, Weaver DS, Weerasinghe D, Zhang P, Karp PD. Caspi R, et al. Among authors: holland ta. Nucleic Acids Res. 2014 Jan;42(Database issue):D459-71. doi: 10.1093/nar/gkt1103. Epub 2013 Nov 12. Nucleic Acids Res. 2014. PMID: 24225315 Free PMC article.
PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools.
Hu JC, Sherlock G, Siegele DA, Aleksander SA, Ball CA, Demeter J, Gouni S, Holland TA, Karp PD, Lewis JE, Liles NM, McIntosh BK, Mi H, Muruganujan A, Wymore F, Thomas PD, Altman T. Hu JC, et al. Among authors: holland ta. Nucleic Acids Res. 2014 Jan;42(Database issue):D677-84. doi: 10.1093/nar/gkt1203. Epub 2013 Nov 26. Nucleic Acids Res. 2014. PMID: 24285306 Free PMC article.