A genome-wide SNP genotyping resource for tropical pine tree species.
Jackson C, Christie N, Reynolds SM, Marais GC, Tii-Kuzu Y, Caballero M, Kampman T, Visser EA, Naidoo S, Kain D, Whetten RW, Isik F, Wegrzyn J, Hodge GR, Acosta JJ, Myburg AA.
Jackson C, et al.
Mol Ecol Resour. 2022 Feb;22(2):695-710. doi: 10.1111/1755-0998.13484. Epub 2021 Aug 28.
Mol Ecol Resour. 2022.
PMID: 34383377
Altogether, 300 K RNA-seq (72%) and 120 K capture-seq (28%) derived SNP probe sets were tiled on a 420 K screening array that was used to genotype 576 trees representing the 81 provenances and commercial breeding material. Based on the screening array results, 50 K SNPs we …
Altogether, 300 K RNA-seq (72%) and 120 K capture-seq (28%) derived SNP probe sets were tiled on a 420 K screening array that was used to ge …