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LazyB: fast and cheap genome assembly.
Gatter T, von Löhneysen S, Fallmann J, Drozdova P, Hartmann T, Stadler PF. Gatter T, et al. Algorithms Mol Biol. 2021 Jun 1;16(1):8. doi: 10.1186/s13015-021-00186-5. Algorithms Mol Biol. 2021. PMID: 34074310 Free PMC article.
The Genome of the "Sea Vomit" Didemnum vexillum.
Parra-Rincón E, Velandia-Huerto CA, Gittenberger A, Fallmann J, Gatter T, Brown FD, Stadler PF, Bermúdez-Santana CI. Parra-Rincón E, et al. Among authors: gatter t. Life (Basel). 2021 Dec 10;11(12):1377. doi: 10.3390/life11121377. Life (Basel). 2021. PMID: 34947908 Free PMC article.
Expansion of gene clusters, circular orders, and the shortest Hamiltonian path problem.
Prohaska SJ, Berkemer SJ, Gärtner F, Gatter T, Retzlaff N; Students of the Graphs and Biological Networks Lab 2017; Höner Zu Siederdissen C, Stadler PF. Prohaska SJ, et al. Among authors: gatter t. J Math Biol. 2018 Aug;77(2):313-341. doi: 10.1007/s00285-017-1197-3. Epub 2017 Dec 19. J Math Biol. 2018. PMID: 29260295 Free PMC article.
Tools and data services registry: a community effort to document bioinformatics resources.
Ison J, Rapacki K, Ménager H, Kalaš M, Rydza E, Chmura P, Anthon C, Beard N, Berka K, Bolser D, Booth T, Bretaudeau A, Brezovsky J, Casadio R, Cesareni G, Coppens F, Cornell M, Cuccuru G, Davidsen K, Vedova GD, Dogan T, Doppelt-Azeroual O, Emery L, Gasteiger E, Gatter T, Goldberg T, Grosjean M, Grüning B, Helmer-Citterich M, Ienasescu H, Ioannidis V, Jespersen MC, Jimenez R, Juty N, Juvan P, Koch M, Laibe C, Li JW, Licata L, Mareuil F, Mičetić I, Friborg RM, Moretti S, Morris C, Möller S, Nenadic A, Peterson H, Profiti G, Rice P, Romano P, Roncaglia P, Saidi R, Schafferhans A, Schwämmle V, Smith C, Sperotto MM, Stockinger H, Vařeková RS, Tosatto SC, de la Torre V, Uva P, Via A, Yachdav G, Zambelli F, Vriend G, Rost B, Parkinson H, Løngreen P, Brunak S. Ison J, et al. Among authors: gatter t. Nucleic Acids Res. 2016 Jan 4;44(D1):D38-47. doi: 10.1093/nar/gkv1116. Epub 2015 Nov 3. Nucleic Acids Res. 2016. PMID: 26538599 Free PMC article.