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2023 4
2024 2

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Scalable, accessible, and reproducible reference genome assembly and evaluation in Galaxy.
Larivière D, Abueg L, Brajuka N, Gallardo-Alba C, Grüning B, Ko BJ, Ostrovsky A, Palmada-Flores M, Pickett BD, Rabbani K, Balacco JR, Chaisson M, Cheng H, Collins J, Denisova A, Fedrigo O, Gallo GR, Giani AM, Gooder GM, Jain N, Johnson C, Kim H, Lee C, Marques-Bonet T, O'Toole B, Rhie A, Secomandi S, Sozzoni M, Tilley T, Uliano-Silva M, van den Beek M, Waterhouse RM, Phillippy AM, Jarvis ED, Schatz MC, Nekrutenko A, Formenti G. Larivière D, et al. Among authors: tilley t. bioRxiv [Preprint]. 2023 Jun 30:2023.06.28.546576. doi: 10.1101/2023.06.28.546576. bioRxiv. 2023. PMID: 37425881 Free PMC article. Updated. Preprint.
MHC class II genes mediate susceptibility and resistance to coronavirus infections in bats.
Schmid DW, Meyer M, Wilhelm K, Tilley T, Link-Hessing T, Fleischer R, Badu EK, Nkrumah EE, Oppong SK, Schwensow N, Tschapka M, Baldwin HJ, Vallo P, Corman VM, Drosten C, Sommer S. Schmid DW, et al. Among authors: tilley t. Mol Ecol. 2023 Jul;32(14):3989-4002. doi: 10.1111/mec.16983. Epub 2023 May 19. Mol Ecol. 2023. PMID: 37203872
A Chromosome-Level Reference Genome for the Black-Legged Kittiwake (Rissa tridactyla), a Declining Circumpolar Seabird.
Sozzoni M, Ferrer Obiol J, Formenti G, Tigano A, Paris JR, Balacco JR, Jain N, Tilley T, Collins J, Sims Y, Wood J, Benowitz-Fredericks ZM, Field KA, Seyoum E, Gatt MC, Léandri-Breton DJ, Nakajima C, Whelan S, Gianfranceschi L, Hatch SA, Elliott KH, Shoji A, Cecere JG, Jarvis ED, Pilastro A, Rubolini D. Sozzoni M, et al. Among authors: tilley t. Genome Biol Evol. 2023 Aug 1;15(8):evad153. doi: 10.1093/gbe/evad153. Genome Biol Evol. 2023. PMID: 37590950 Free PMC article.
Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy.
Larivière D, Abueg L, Brajuka N, Gallardo-Alba C, Grüning B, Ko BJ, Ostrovsky A, Palmada-Flores M, Pickett BD, Rabbani K, Antunes A, Balacco JR, Chaisson MJP, Cheng H, Collins J, Couture M, Denisova A, Fedrigo O, Gallo GR, Giani AM, Gooder GM, Horan K, Jain N, Johnson C, Kim H, Lee C, Marques-Bonet T, O'Toole B, Rhie A, Secomandi S, Sozzoni M, Tilley T, Uliano-Silva M, van den Beek M, Williams RW, Waterhouse RM, Phillippy AM, Jarvis ED, Schatz MC, Nekrutenko A, Formenti G. Larivière D, et al. Among authors: tilley t. Nat Biotechnol. 2024 Mar;42(3):367-370. doi: 10.1038/s41587-023-02100-3. Nat Biotechnol. 2024. PMID: 38278971 No abstract available.
Prioritizing Endangered Species in Genome Sequencing: Conservation Genomics in Action with the First Platinum-Standard Reference-Quality Genome of the Critically Endangered European Mink Mustela lutreola L., 1761.
Skorupski J, Brandes F, Seebass C, Festl W, Śmietana P, Balacco J, Jain N, Tilley T, Abueg L, Wood J, Sims Y, Formenti G, Fedrigo O, Jarvis ED. Skorupski J, et al. Among authors: tilley t. Int J Mol Sci. 2023 Oct 1;24(19):14816. doi: 10.3390/ijms241914816. Int J Mol Sci. 2023. PMID: 37834264 Free PMC article.