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Neural model of gene regulatory network: a survey on supportive meta-heuristics.
Theory Biosci. 2016 Jun;135(1-2):1-19. doi: 10.1007/s12064-016-0224-z. Epub 2016 Apr 5.
Theory Biosci. 2016.
PMID: 27048512
Review.
Learning in Transcriptional Network Models: Computational Discovery of Pathway-Level Memory and Effective Interventions.
Biswas S, Clawson W, Levin M.
Biswas S, et al.
Int J Mol Sci. 2022 Dec 23;24(1):285. doi: 10.3390/ijms24010285.
Int J Mol Sci. 2022.
PMID: 36613729
Free PMC article.
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Gene regulatory networks exhibit several kinds of memory: quantification of memory in biological and random transcriptional networks.
Biswas S, Manicka S, Hoel E, Levin M.
Biswas S, et al.
iScience. 2021 Feb 1;24(3):102131. doi: 10.1016/j.isci.2021.102131. eCollection 2021 Mar 19.
iScience. 2021.
PMID: 33748699
Free PMC article.
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Multi-objective Simulated Annealing Variants to Infer Gene Regulatory Network: A Comparative Study.
Biswas S, Acharyya S.
Biswas S, et al.
IEEE/ACM Trans Comput Biol Bioinform. 2021 Nov-Dec;18(6):2612-2623. doi: 10.1109/TCBB.2020.2992304. Epub 2021 Dec 8.
IEEE/ACM Trans Comput Biol Bioinform. 2021.
PMID: 32386161
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A Bi-Objective RNN Model to Reconstruct Gene Regulatory Network: A Modified Multi-Objective Simulated Annealing Approach.
Biswas S, Acharyya S.
Biswas S, et al.
IEEE/ACM Trans Comput Biol Bioinform. 2018 Nov-Dec;15(6):2053-2059. doi: 10.1109/TCBB.2017.2771360. Epub 2017 Nov 9.
IEEE/ACM Trans Comput Biol Bioinform. 2018.
PMID: 29990170
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Identification of Disease Critical Genes Using Collective Meta-heuristic Approaches: An Application to Preeclampsia.
Biswas S, Dutta S, Acharyya S.
Biswas S, et al.
Interdiscip Sci. 2019 Sep;11(3):444-459. doi: 10.1007/s12539-017-0276-x. Epub 2017 Dec 1.
Interdiscip Sci. 2019.
PMID: 29196984
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