Whole Exome Sequence Analysis Provides Novel Insights into the Genetic Framework of Childhood-Onset Pulmonary Arterial Hypertension

Genes (Basel). 2020 Nov 11;11(11):1328. doi: 10.3390/genes11111328.

Abstract

Pulmonary arterial hypertension (PAH) describes a rare, progressive vascular disease caused by the obstruction of pulmonary arterioles, typically resulting in right heart failure. Whilst PAH most often manifests in adulthood, paediatric disease is considered to be a distinct entity with increased morbidity and often an unexplained resistance to current therapies. Recent genetic studies have substantially increased our understanding of PAH pathogenesis, providing opportunities for molecular diagnosis and presymptomatic genetic testing in families. However, the genetic architecture of childhood-onset PAH remains relatively poorly characterised. We sought to investigate a previously unsolved paediatric cohort (n = 18) using whole exome sequencing to improve the molecular diagnosis of childhood-onset PAH. Through a targeted investigation of 26 candidate genes, we applied a rigorous variant filtering methodology to enrich for rare, likely pathogenic variants. This analysis led to the detection of novel PAH risk alleles in five genes, including the first identification of a heterozygous ATP13A3 mutation in childhood-onset disease. In addition, we provide the first independent validation of BMP10 and PDGFD as genetic risk factors for PAH. These data provide a molecular diagnosis in 28% of paediatric cases, reflecting the increased genetic burden in childhood-onset disease and highlighting the importance of next-generation sequencing approaches to diagnostic surveillance.

Keywords: exome sequencing; lung disease; molecular genetics; paediatrics; pulmonary arterial hypertension.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine Triphosphatases / genetics
  • Bone Morphogenetic Proteins / genetics
  • Child
  • Child, Preschool
  • Cohort Studies
  • Exome Sequencing / methods
  • Female
  • Genetic Predisposition to Disease / genetics
  • Humans
  • Infant
  • Lymphokines / genetics
  • Male
  • Membrane Transport Proteins / genetics
  • Mutation
  • Platelet-Derived Growth Factor / genetics
  • Pulmonary Arterial Hypertension / genetics*
  • Risk Factors
  • Smad8 Protein / genetics
  • Sulfonylurea Receptors / genetics

Substances

  • ABCC8 protein, human
  • BMP10 protein, human
  • Bone Morphogenetic Proteins
  • Lymphokines
  • Membrane Transport Proteins
  • PDGFD protein, human
  • Platelet-Derived Growth Factor
  • SMAD9 protein, human
  • Smad8 Protein
  • Sulfonylurea Receptors
  • ATP13A3 protein, human
  • Adenosine Triphosphatases