Ruslan N. Sharipov - Search Results

Year	Number of Results
2008	1
2015	1
2016	1
2018	3
2019	1
2020	1
2021	1
2022	1
2024	0

1

Physiologically Based Pharmacokinetic Modeling of Nanoparticle Biodistribution: A Review of Existing Models, Simulation Software, and Data Analysis Tools.

Kutumova EO, Akberdin IR, Kiselev IN, Sharipov RN, Egorova VS, Syrocheva AO, Parodi A, Zamyatnin AA Jr, Kolpakov FA. Kutumova EO, et al. Among authors: sharipov rn. Int J Mol Sci. 2022 Oct 19;23(20):12560. doi: 10.3390/ijms232012560. Int J Mol Sci. 2022. PMID: 36293410 Free PMC article. Review.

2

Population size estimation for quality control of ChIP-Seq datasets.

Kolmykov SK, Kondrakhin YV, Yevshin IS, Sharipov RN, Ryabova AS, Kolpakov FA. Kolmykov SK, et al. Among authors: sharipov rn. PLoS One. 2019 Aug 29;14(8):e0221760. doi: 10.1371/journal.pone.0221760. eCollection 2019. PLoS One. 2019. PMID: 31465497 Free PMC article.

3

Assessment of transcriptional importance of cell line-specific features based on GTRD and FANTOM5 data.

Sharipov RN, Kondrakhin YV, Ryabova AS, Yevshin IS, Kolpakov FA. Sharipov RN, et al. PLoS One. 2020 Dec 21;15(12):e0243332. doi: 10.1371/journal.pone.0243332. eCollection 2020. PLoS One. 2020. PMID: 33347457 Free PMC article.

4

Comparative analysis of protein-coding and long non-coding transcripts based on RNA sequence features.

Volkova OA, Kondrakhin YV, Kashapov TA, Sharipov RN. Volkova OA, et al. Among authors: sharipov rn. J Bioinform Comput Biol. 2018 Apr;16(2):1840013. doi: 10.1142/S0219720018400139. J Bioinform Comput Biol. 2018. PMID: 29739305

5

A Modular Mathematical Model of Exercise-Induced Changes in Metabolism, Signaling, and Gene Expression in Human Skeletal Muscle.

Akberdin IR, Kiselev IN, Pintus SS, Sharipov RN, Vertyshev AY, Vinogradova OL, Popov DV, Kolpakov FA. Akberdin IR, et al. Among authors: sharipov rn. Int J Mol Sci. 2021 Sep 26;22(19):10353. doi: 10.3390/ijms221910353. Int J Mol Sci. 2021. PMID: 34638694 Free PMC article.

6

Genome-wide map of human and mouse transcription factor binding sites aggregated from ChIP-Seq data.

Vorontsov IE, Fedorova AD, Yevshin IS, Sharipov RN, Kolpakov FA, Makeev VJ, Kulakovskiy IV. Vorontsov IE, et al. Among authors: sharipov rn. BMC Res Notes. 2018 Oct 23;11(1):756. doi: 10.1186/s13104-018-3856-x. BMC Res Notes. 2018. PMID: 30352610 Free PMC article.

7

HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis.

Kulakovskiy IV, Vorontsov IE, Yevshin IS, Sharipov RN, Fedorova AD, Rumynskiy EI, Medvedeva YA, Magana-Mora A, Bajic VB, Papatsenko DA, Kolpakov FA, Makeev VJ. Kulakovskiy IV, et al. Among authors: sharipov rn. Nucleic Acids Res. 2018 Jan 4;46(D1):D252-D259. doi: 10.1093/nar/gkx1106. Nucleic Acids Res. 2018. PMID: 29140464 Free PMC article.

8

Assessment of translational importance of mammalian mRNA sequence features based on Ribo-Seq and mRNA-Seq data.

Volkova OA, Kondrakhin YV, Yevshin IS, Valeev TF, Sharipov RN. Volkova OA, et al. Among authors: sharipov rn. J Bioinform Comput Biol. 2016 Apr;14(2):1641006. doi: 10.1142/S0219720016410067. J Bioinform Comput Biol. 2016. PMID: 27122318

9

Transcriptome Characteristics and X-Chromosome Inactivation Status in Cultured Rat Pluripotent Stem Cells.

Vaskova EA, Medvedev SP, Sorokina AE, Nemudryy AA, Elisaphenko EA, Zakharova IS, Shevchenko AI, Kizilova EA, Zhelezova AI, Evshin IS, Sharipov RN, Minina JM, Zhdanova NS, Khegay II, Kolpakov FA, Sukhikh GT, Pokushalov EA, Karaskov AM, Vlasov VV, Ivanova LN, Zakian SM. Vaskova EA, et al. Among authors: sharipov rn. Stem Cells Dev. 2015 Dec 15;24(24):2912-24. doi: 10.1089/scd.2015.0204. Epub 2015 Sep 29. Stem Cells Dev. 2015. PMID: 26418521

10

Identification of differentially expressed genes by meta-analysis of microarray data on breast cancer.

Kondrakhin YV, Sharipov RN, Keld AE, Kolpakov FA. Kondrakhin YV, et al. Among authors: sharipov rn. In Silico Biol. 2008;8(5-6):383-411. In Silico Biol. 2008. PMID: 19374127

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