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Page 1
Feature extraction approaches for biological sequences: a comparative study of mathematical features.
Brief Bioinform. 2021 Sep 2;22(5):bbab011. doi: 10.1093/bib/bbab011.
Brief Bioinform. 2021.
PMID: 33585910
Review.
BioAutoML: automated feature engineering and metalearning to predict noncoding RNAs in bacteria.
Bonidia RP, Santos APA, de Almeida BLS, Stadler PF, da Rocha UN, Sanches DS, de Carvalho ACPLF.
Bonidia RP, et al.
Brief Bioinform. 2022 Jul 18;23(4):bbac218. doi: 10.1093/bib/bbac218.
Brief Bioinform. 2022.
PMID: 35753697
Free PMC article.
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MathFeature: feature extraction package for DNA, RNA and protein sequences based on mathematical descriptors.
Bonidia RP, Domingues DS, Sanches DS, de Carvalho ACPLF.
Bonidia RP, et al.
Brief Bioinform. 2022 Jan 17;23(1):bbab434. doi: 10.1093/bib/bbab434.
Brief Bioinform. 2022.
PMID: 34750626
Free PMC article.
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Information Theory for Biological Sequence Classification: A Novel Feature Extraction Technique Based on Tsallis Entropy.
Bonidia RP, Avila Santos AP, de Almeida BLS, Stadler PF, Nunes da Rocha U, Sanches DS, de Carvalho ACPLF.
Bonidia RP, et al.
Entropy (Basel). 2022 Oct 1;24(10):1398. doi: 10.3390/e24101398.
Entropy (Basel). 2022.
PMID: 37420418
Free PMC article.
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BioDeepfuse: a hybrid deep learning approach with integrated feature extraction techniques for enhanced non-coding RNA classification.
Avila Santos AP, de Almeida BLS, Bonidia RP, Stadler PF, Stefanic P, Mandic-Mulec I, Rocha U, Sanches DS, de Carvalho ACPLF.
Avila Santos AP, et al. Among authors: bonidia rp.
RNA Biol. 2024 Jan;21(1):1-12. doi: 10.1080/15476286.2024.2329451. Epub 2024 Mar 25.
RNA Biol. 2024.
PMID: 38528797
Free PMC article.
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