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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2004 2
2005 1
2006 2
2007 2
2009 2
2010 1
2011 2
2012 5
2013 6
2014 3
2015 3
2016 4
2017 5
2018 9
2019 4
2020 12
2021 10
2022 9
2023 15
2024 2

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94 results

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Page 1
A pseudovirus system enables deep mutational scanning of the full SARS-CoV-2 spike.
Dadonaite B, Crawford KHD, Radford CE, Farrell AG, Yu TC, Hannon WW, Zhou P, Andrabi R, Burton DR, Liu L, Ho DD, Chu HY, Neher RA, Bloom JD. Dadonaite B, et al. Among authors: neher ra. Cell. 2023 Mar 16;186(6):1263-1278.e20. doi: 10.1016/j.cell.2023.02.001. Epub 2023 Feb 13. Cell. 2023. PMID: 36868218 Free PMC article.
Evolution of the SARS-CoV-2 Mutational Spectrum.
Bloom JD, Beichman AC, Neher RA, Harris K. Bloom JD, et al. Among authors: neher ra. Mol Biol Evol. 2023 Apr 4;40(4):msad085. doi: 10.1093/molbev/msad085. Mol Biol Evol. 2023. PMID: 37039557 Free PMC article.
Investigate the origins of COVID-19.
Bloom JD, Chan YA, Baric RS, Bjorkman PJ, Cobey S, Deverman BE, Fisman DN, Gupta R, Iwasaki A, Lipsitch M, Medzhitov R, Neher RA, Nielsen R, Patterson N, Stearns T, van Nimwegen E, Worobey M, Relman DA. Bloom JD, et al. Among authors: neher ra. Science. 2021 May 14;372(6543):694. doi: 10.1126/science.abj0016. Science. 2021. PMID: 33986172 Free PMC article. No abstract available.
Evolution of the SARS-CoV-2 mutational spectrum.
Bloom JD, Beichman AC, Neher RA, Harris K. Bloom JD, et al. Among authors: neher ra. bioRxiv [Preprint]. 2022 Nov 21:2022.11.19.517207. doi: 10.1101/2022.11.19.517207. bioRxiv. 2022. PMID: 36451887 Free PMC article. Updated. Preprint.
panX: pan-genome analysis and exploration.
Ding W, Baumdicker F, Neher RA. Ding W, et al. Among authors: neher ra. Nucleic Acids Res. 2018 Jan 9;46(1):e5. doi: 10.1093/nar/gkx977. Nucleic Acids Res. 2018. PMID: 29077859 Free PMC article.
TreeTime: Maximum-likelihood phylodynamic analysis.
Sagulenko P, Puller V, Neher RA. Sagulenko P, et al. Among authors: neher ra. Virus Evol. 2018 Jan 8;4(1):vex042. doi: 10.1093/ve/vex042. eCollection 2018 Jan. Virus Evol. 2018. PMID: 29340210 Free PMC article.
APOBEC3 deaminase editing in mpox virus as evidence for sustained human transmission since at least 2016.
O'Toole Á, Neher RA, Ndodo N, Borges V, Gannon B, Gomes JP, Groves N, King DJ, Maloney D, Lemey P, Lewandowski K, Loman N, Myers R, Omah IF, Suchard MA, Worobey M, Chand M, Ihekweazu C, Ulaeto D, Adetifa I, Rambaut A. O'Toole Á, et al. Among authors: neher ra. Science. 2023 Nov 3;382(6670):595-600. doi: 10.1126/science.adg8116. Epub 2023 Nov 2. Science. 2023. PMID: 37917680 Free PMC article.
Nextstrain: real-time tracking of pathogen evolution.
Hadfield J, Megill C, Bell SM, Huddleston J, Potter B, Callender C, Sagulenko P, Bedford T, Neher RA. Hadfield J, et al. Among authors: neher ra. Bioinformatics. 2018 Dec 1;34(23):4121-4123. doi: 10.1093/bioinformatics/bty407. Bioinformatics. 2018. PMID: 29790939 Free PMC article.
94 results