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A Bayesian method to cluster single-cell RNA sequencing data using copy number alterations.
Bioinformatics. 2022 Apr 28;38(9):2512-2518. doi: 10.1093/bioinformatics/btac143.
Bioinformatics. 2022.
PMID: 35298589
Free article.
A Bayesian method to infer copy number clones from single-cell RNA and ATAC sequencing.
Patruno L, Milite S, Bergamin R, Calonaci N, D'Onofrio A, Anselmi F, Antoniotti M, Graudenzi A, Caravagna G.
Patruno L, et al. Among authors: bergamin r.
PLoS Comput Biol. 2023 Nov 2;19(11):e1011557. doi: 10.1371/journal.pcbi.1011557. eCollection 2023 Nov.
PLoS Comput Biol. 2023.
PMID: 37917660
Free PMC article.
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Computational validation of clonal and subclonal copy number alterations from bulk tumor sequencing using CNAqc.
Antonello A, Bergamin R, Calonaci N, Househam J, Milite S, Williams MJ, Anselmi F, d'Onofrio A, Sundaram V, Sosinsky A, Cross WCH, Caravagna G.
Antonello A, et al. Among authors: bergamin r.
Genome Biol. 2024 Jan 31;25(1):38. doi: 10.1186/s13059-024-03170-5.
Genome Biol. 2024.
PMID: 38297376
Free PMC article.
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