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DNA Structure Design Is Improved Using an Artificially Expanded Alphabet of Base Pairs Including Loop and Mismatch Thermodynamic Parameters.
ACS Synth Biol. 2023 Sep 15;12(9):2750-2763. doi: 10.1021/acssynbio.3c00358. Epub 2023 Sep 6.
ACS Synth Biol. 2023.
PMID: 37671922
Free PMC article.
Accelerated RNA secondary structure design using preselected sequences for helices and loops.
Bellaousov S, Kayedkhordeh M, Peterson RJ, Mathews DH.
Bellaousov S, et al. Among authors: peterson rj.
RNA. 2018 Nov;24(11):1555-1567. doi: 10.1261/rna.066324.118. Epub 2018 Aug 10.
RNA. 2018.
PMID: 30097542
Free PMC article.
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Biophysics of Artificially Expanded Genetic Information Systems. Thermodynamics of DNA Duplexes Containing Matches and Mismatches Involving 2-Amino-3-nitropyridin-6-one (Z) and Imidazo[1,2-a]-1,3,5-triazin-4(8H)one (P).
Wang X, Hoshika S, Peterson RJ, Kim MJ, Benner SA, Kahn JD.
Wang X, et al. Among authors: peterson rj.
ACS Synth Biol. 2017 May 19;6(5):782-792. doi: 10.1021/acssynbio.6b00224. Epub 2017 Feb 9.
ACS Synth Biol. 2017.
PMID: 28094993
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Position-dependent effects of locked nucleic acid (LNA) on DNA sequencing and PCR primers.
Levin JD, Fiala D, Samala MF, Kahn JD, Peterson RJ.
Levin JD, et al. Among authors: peterson rj.
Nucleic Acids Res. 2006;34(20):e142. doi: 10.1093/nar/gkl756. Epub 2006 Oct 28.
Nucleic Acids Res. 2006.
PMID: 17071964
Free PMC article.
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Sequence-dependent thermodynamic parameters for locked nucleic acid (LNA)-DNA duplex formation.
McTigue PM, Peterson RJ, Kahn JD.
McTigue PM, et al. Among authors: peterson rj.
Biochemistry. 2004 May 11;43(18):5388-405. doi: 10.1021/bi035976d.
Biochemistry. 2004.
PMID: 15122905
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DNA Structure Design Is Improved Using an Artificially Expanded Alphabet of Base Pairs Including Loop and Mismatch Thermodynamic Parameters.
Pham TM, Miffin T, Sun H, Sharp KK, Wang X, Zhu M, Hoshika S, Peterson RJ, Benner SA, Kahn JD, Mathews DH.
Pham TM, et al. Among authors: peterson rj.
bioRxiv [Preprint]. 2023 Jun 8:2023.06.06.543917. doi: 10.1101/2023.06.06.543917.
bioRxiv. 2023.
PMID: 37333404
Free PMC article.
Updated.
Preprint.
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