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Year Number of Results
2005 1
2008 1
2011 1
2012 2
2013 3
2014 2
2015 5
2016 3
2018 7
2019 5
2020 5
2021 5
2022 6
2023 3
2024 4

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Page 1
Reporting guidelines for human microbiome research: the STORMS checklist.
Mirzayi C, Renson A; Genomic Standards Consortium; Massive Analysis and Quality Control Society; Zohra F, Elsafoury S, Geistlinger L, Kasselman LJ, Eckenrode K, van de Wijgert J, Loughman A, Marques FZ, MacIntyre DA, Arumugam M, Azhar R, Beghini F, Bergstrom K, Bhatt A, Bisanz JE, Braun J, Bravo HC, Buck GA, Bushman F, Casero D, Clarke G, Collado MC, Cotter PD, Cryan JF, Demmer RT, Devkota S, Elinav E, Escobar JS, Fettweis J, Finn RD, Fodor AA, Forslund S, Franke A, Furlanello C, Gilbert J, Grice E, Haibe-Kains B, Handley S, Herd P, Holmes S, Jacobs JP, Karstens L, Knight R, Knights D, Koren O, Kwon DS, Langille M, Lindsay B, McGovern D, McHardy AC, McWeeney S, Mueller NT, Nezi L, Olm M, Palm N, Pasolli E, Raes J, Redinbo MR, Rühlemann M, Balfour Sartor R, Schloss PD, Schriml L, Segal E, Shardell M, Sharpton T, Smirnova E, Sokol H, Sonnenburg JL, Srinivasan S, Thingholm LB, Turnbaugh PJ, Upadhyay V, Walls RL, Wilmes P, Yamada T, Zeller G, Zhang M, Zhao N, Zhao L, Bao W, Culhane A, Devanarayan V, Dopazo J, Fan X, Fischer M, Jones W, Kusko R, Mason CE, Mercer TR, Sansone SA, Scherer A, Shi L, Thakkar S, Tong W, Wolfinger R, Hunter C, Segata N, Huttenhower C, Dowd JB, Jones HE… See abstract for full author list ➔ Mirzayi C, et al. Among authors: walls rl. Nat Med. 2021 Nov;27(11):1885-1892. doi: 10.1038/s41591-021-01552-x. Epub 2021 Nov 17. Nat Med. 2021. PMID: 34789871 Free PMC article. Review.
Ten simple rules to cultivate transdisciplinary collaboration in data science.
Sahneh F, Balk MA, Kisley M, Chan CK, Fox M, Nord B, Lyons E, Swetnam T, Huppenkothen D, Sutherland W, Walls RL, Quinn DP, Tarin T, LeBauer D, Ribes D, Birnie DP 3rd, Lushbough C, Carr E, Nearing G, Fischer J, Tyle K, Carrasco L, Lang M, Rose PW, Rushforth RR, Roy S, Matheson T, Lee T, Brown CT, Teal TK, Papeș M, Kobourov S, Merchant N. Sahneh F, et al. Among authors: walls rl. PLoS Comput Biol. 2021 May 13;17(5):e1008879. doi: 10.1371/journal.pcbi.1008879. eCollection 2021 May. PLoS Comput Biol. 2021. PMID: 33983959 Free PMC article. No abstract available.
CyVerse: Cyberinfrastructure for open science.
Swetnam TL, Antin PB, Bartelme R, Bucksch A, Camhy D, Chism G, Choi I, Cooksey AM, Cosi M, Cowen C, Culshaw-Maurer M, Davey R, Davey S, Devisetty U, Edgin T, Edmonds A, Fedorov D, Frady J, Fonner J, Gillan JK, Hossain I, Joyce B, Lang K, Lee T, Littin S, McEwen I, Merchant N, Micklos D, Nelson A, Ramsey A, Roberts S, Sarando P, Skidmore E, Song J, Sprinkle MM, Srinivasan S, Stanzione D, Strootman JD, Stryeck S, Tuteja R, Vaughn M, Wali M, Wall M, Walls R, Wang L, Wickizer T, Williams J, Wregglesworth J, Lyons E. Swetnam TL, et al. Among authors: walls r. PLoS Comput Biol. 2024 Feb 7;20(2):e1011270. doi: 10.1371/journal.pcbi.1011270. eCollection 2024 Feb. PLoS Comput Biol. 2024. PMID: 38324613 Free PMC article.
Towards global data products of Essential Biodiversity Variables on species traits.
Kissling WD, Walls R, Bowser A, Jones MO, Kattge J, Agosti D, Amengual J, Basset A, van Bodegom PM, Cornelissen JHC, Denny EG, Deudero S, Egloff W, Elmendorf SC, Alonso García E, Jones KD, Jones OR, Lavorel S, Lear D, Navarro LM, Pawar S, Pirzl R, Rüger N, Sal S, Salguero-Gómez R, Schigel D, Schulz KS, Skidmore A, Guralnick RP. Kissling WD, et al. Among authors: walls r. Nat Ecol Evol. 2018 Oct;2(10):1531-1540. doi: 10.1038/s41559-018-0667-3. Epub 2018 Sep 17. Nat Ecol Evol. 2018. PMID: 30224814 Free article. Review.
Transforming the study of organisms: Phenomic data models and knowledge bases.
Thessen AE, Walls RL, Vogt L, Singer J, Warren R, Buttigieg PL, Balhoff JP, Mungall CJ, McGuinness DL, Stucky BJ, Yoder MJ, Haendel MA. Thessen AE, et al. Among authors: walls rl. PLoS Comput Biol. 2020 Nov 24;16(11):e1008376. doi: 10.1371/journal.pcbi.1008376. eCollection 2020 Nov. PLoS Comput Biol. 2020. PMID: 33232313 Free PMC article. Review.
Open Science principles for accelerating trait-based science across the Tree of Life.
Gallagher RV, Falster DS, Maitner BS, Salguero-Gómez R, Vandvik V, Pearse WD, Schneider FD, Kattge J, Poelen JH, Madin JS, Ankenbrand MJ, Penone C, Feng X, Adams VM, Alroy J, Andrew SC, Balk MA, Bland LM, Boyle BL, Bravo-Avila CH, Brennan I, Carthey AJR, Catullo R, Cavazos BR, Conde DA, Chown SL, Fadrique B, Gibb H, Halbritter AH, Hammock J, Hogan JA, Holewa H, Hope M, Iversen CM, Jochum M, Kearney M, Keller A, Mabee P, Manning P, McCormack L, Michaletz ST, Park DS, Perez TM, Pineda-Munoz S, Ray CA, Rossetto M, Sauquet H, Sparrow B, Spasojevic MJ, Telford RJ, Tobias JA, Violle C, Walls R, Weiss KCB, Westoby M, Wright IJ, Enquist BJ. Gallagher RV, et al. Among authors: walls r. Nat Ecol Evol. 2020 Mar;4(3):294-303. doi: 10.1038/s41559-020-1109-6. Epub 2020 Feb 17. Nat Ecol Evol. 2020. PMID: 32066887 Review.
Finding our way through phenotypes.
Deans AR, Lewis SE, Huala E, Anzaldo SS, Ashburner M, Balhoff JP, Blackburn DC, Blake JA, Burleigh JG, Chanet B, Cooper LD, Courtot M, Csösz S, Cui H, Dahdul W, Das S, Dececchi TA, Dettai A, Diogo R, Druzinsky RE, Dumontier M, Franz NM, Friedrich F, Gkoutos GV, Haendel M, Harmon LJ, Hayamizu TF, He Y, Hines HM, Ibrahim N, Jackson LM, Jaiswal P, James-Zorn C, Köhler S, Lecointre G, Lapp H, Lawrence CJ, Le Novère N, Lundberg JG, Macklin J, Mast AR, Midford PE, Mikó I, Mungall CJ, Oellrich A, Osumi-Sutherland D, Parkinson H, Ramírez MJ, Richter S, Robinson PN, Ruttenberg A, Schulz KS, Segerdell E, Seltmann KC, Sharkey MJ, Smith AD, Smith B, Specht CD, Squires RB, Thacker RW, Thessen A, Fernandez-Triana J, Vihinen M, Vize PD, Vogt L, Wall CE, Walls RL, Westerfeld M, Wharton RA, Wirkner CS, Woolley JB, Yoder MJ, Zorn AM, Mabee P. Deans AR, et al. Among authors: walls rl. PLoS Biol. 2015 Jan 6;13(1):e1002033. doi: 10.1371/journal.pbio.1002033. eCollection 2015 Jan. PLoS Biol. 2015. PMID: 25562316 Free PMC article.
The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genes and diseases across species.
Putman TE, Schaper K, Matentzoglu N, Rubinetti VP, Alquaddoomi FS, Cox C, Caufield JH, Elsarboukh G, Gehrke S, Hegde H, Reese JT, Braun I, Bruskiewich RM, Cappelletti L, Carbon S, Caron AR, Chan LE, Chute CG, Cortes KG, De Souza V, Fontana T, Harris NL, Hartley EL, Hurwitz E, Jacobsen JOB, Krishnamurthy M, Laraway BJ, McLaughlin JA, McMurry JA, Moxon SAT, Mullen KR, O'Neil ST, Shefchek KA, Stefancsik R, Toro S, Vasilevsky NA, Walls RL, Whetzel PL, Osumi-Sutherland D, Smedley D, Robinson PN, Mungall CJ, Haendel MA, Munoz-Torres MC. Putman TE, et al. Among authors: walls rl. Nucleic Acids Res. 2024 Jan 5;52(D1):D938-D949. doi: 10.1093/nar/gkad1082. Nucleic Acids Res. 2024. PMID: 38000386 Free PMC article.
The founding charter of the Omic Biodiversity Observation Network (Omic BON).
Meyer R, Davies N, Pitz KJ, Meyer C, Samuel R, Anderson J, Appeltans W, Barker K, Chavez FP, Duffy JE, Goodwin KD, Hudson M, Hunter ME, Karstensen J, Laney CM, Leinen M, Mabee P, Macklin JA, Muller-Karger F, Pade N, Pearlman J, Phillips L, Provoost P, Santi I, Schigel D, Schriml LM, Soccodato A, Suominen S, Thibault KM, Ung V, van de Kamp J, Wallis E, Walls R, Buttigieg PL. Meyer R, et al. Among authors: walls r. Gigascience. 2022 Dec 28;12:giad068. doi: 10.1093/gigascience/giad068. Epub 2023 Aug 26. Gigascience. 2022. PMID: 37632753 Free PMC article.
Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies.
Matentzoglu N, Goutte-Gattat D, Tan SZK, Balhoff JP, Carbon S, Caron AR, Duncan WD, Flack JE, Haendel M, Harris NL, Hogan WR, Hoyt CT, Jackson RC, Kim H, Kir H, Larralde M, McMurry JA, Overton JA, Peters B, Pilgrim C, Stefancsik R, Robb SM, Toro S, Vasilevsky NA, Walls R, Mungall CJ, Osumi-Sutherland D. Matentzoglu N, et al. Among authors: walls r. Database (Oxford). 2022 Oct 8;2022:baac087. doi: 10.1093/database/baac087. Database (Oxford). 2022. PMID: 36208225 Free PMC article.
52 results