Bioinformatic Approach of B and T Cell Epitopes of PLD and CP40 Proteins of Corynebacterium pseudotuberculosis ovis Mexican Isolate 2J-L towards a Peptide-Based Vaccine

Int J Mol Sci. 2023 Dec 23;25(1):270. doi: 10.3390/ijms25010270.

Abstract

Mapping B and T cell epitopes constitutes an important action for peptide vaccine design. PLD and CP40 virulence factors of Corynebacterium pseudotuberculosis biovar ovis, a causal agent of Caseous Lymphadenitis, have been evaluated in a murine model as good candidates for vaccine development. Therefore, the goal of this work was to in silico analyze B and T cell epitopes of the PLD and CP40 proteins of a Mexican isolate of Corynebacterium pseudotuberculosis ovis. The Immune Epitope Data Base and Resource website was employed to predict the linear and conformational B-cell, T CD4+, and T CD8+ epitopes of PLD and CP40 proteins of Corynebacterium pseudotuberculosis ovis Mexican strain 2J-L. Fifty B cell epitopes for PLD 2J-L and forty-seven for CP40 2J-L were estimated. In addition, T CD4+ and CD8+ cell epitopes were predicted for PLD 2J-L (MHC I:16 epitopes, MHC II:10 epitopes) and CP40 2J-L (MHC I: 15 epitopes, MHC II: 13 epitopes). This study provides epitopes, paying particular attention to sequences selected by different predictor programs and overlap sequences as B and T cell epitopes. PLD 2J-L and CP40 2J-L protein epitopes may aid in the design of a promising peptide-based vaccine against Caseous Lymphadenitis in Mexico.

Keywords: B cell epitopes; CP40; Corynebacterium pseudotuberculosis ovis; PLD; T cell epitopes; caseous lymphadenitis; peptides.

MeSH terms

  • Animals
  • Computational Biology
  • Corynebacterium Infections* / prevention & control
  • Corynebacterium pseudotuberculosis*
  • Epitopes, T-Lymphocyte
  • Lymphadenitis*
  • Mexico
  • Mice
  • Protein Subunit Vaccines
  • Sheep

Substances

  • Epitopes, T-Lymphocyte
  • Protein Subunit Vaccines

Grants and funding

This study was financed by the Autonomous University of the State of Mexico. Análisis de las islas de patogenicidad de aislados mexicanos de Corynebacterium pseudotuberculosis ovis a través del estudio de secuenciación del genoma completo. Grant 6784/2022CIC.