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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2009 1
2012 1
2013 2
2014 1
2015 3
2016 1
2017 1
2018 1
2019 4
2020 4
2021 3
2022 7
2023 9
2024 2

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36 results

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Page 1
Packaging and containerization of computational methods.
Alser M, Lawlor B, Abdill RJ, Waymost S, Ayyala R, Rajkumar N, LaPierre N, Brito J, Ribeiro-Dos-Santos AM, Almadhoun N, Sarwal V, Firtina C, Osinski T, Eskin E, Hu Q, Strong D, Kim BBD, Abedalthagafi MS, Mutlu O, Mangul S. Alser M, et al. Among authors: mutlu o. Nat Protoc. 2024 Apr 2. doi: 10.1038/s41596-024-00986-0. Online ahead of print. Nat Protoc. 2024. PMID: 38565959 Review.
Technology dictates algorithms: recent developments in read alignment.
Alser M, Rotman J, Deshpande D, Taraszka K, Shi H, Baykal PI, Yang HT, Xue V, Knyazev S, Singer BD, Balliu B, Koslicki D, Skums P, Zelikovsky A, Alkan C, Mutlu O, Mangul S. Alser M, et al. Among authors: mutlu o. Genome Biol. 2021 Aug 26;22(1):249. doi: 10.1186/s13059-021-02443-7. Genome Biol. 2021. PMID: 34446078 Free PMC article. Review.
How does hemodynamics affect rupture tissue mechanics in abdominal aortic aneurysm: Focus on wall shear stress derived parameters, time-averaged wall shear stress, oscillatory shear index, endothelial cell activation potential, and relative residence time.
Mutlu O, Salman HE, Al-Thani H, El-Menyar A, Qidwai UA, Yalcin HC. Mutlu O, et al. Comput Biol Med. 2023 Mar;154:106609. doi: 10.1016/j.compbiomed.2023.106609. Epub 2023 Jan 23. Comput Biol Med. 2023. PMID: 36724610 Review.
BioDynaMo: a modular platform for high-performance agent-based simulation.
Breitwieser L, Hesam A, de Montigny J, Vavourakis V, Iosif A, Jennings J, Kaiser M, Manca M, Di Meglio A, Al-Ars Z, Rademakers F, Mutlu O, Bauer R. Breitwieser L, et al. Among authors: mutlu o. Bioinformatics. 2022 Jan 3;38(2):453-460. doi: 10.1093/bioinformatics/btab649. Bioinformatics. 2022. PMID: 34529036 Free PMC article.
Optimal seed solver: optimizing seed selection in read mapping.
Xin H, Nahar S, Zhu R, Emmons J, Pekhimenko G, Kingsford C, Alkan C, Mutlu O. Xin H, et al. Among authors: mutlu o. Bioinformatics. 2016 Jun 1;32(11):1632-42. doi: 10.1093/bioinformatics/btv670. Epub 2015 Nov 14. Bioinformatics. 2016. PMID: 26568624 Free PMC article.
36 results