Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

Filters

My NCBI Filters

Results by year

Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2013 1
2014 1
2015 2
2016 3
2017 3
2018 5
2019 6
2020 4
2021 4
2022 4
2023 2
2024 2

Text availability

Article attribute

Article type

Publication date

Search Results

29 results

Results by year

Filters applied: . Clear all
Page 1
CRISPR-Cas bioinformatics.
Alkhnbashi OS, Meier T, Mitrofanov A, Backofen R, Voß B. Alkhnbashi OS, et al. Methods. 2020 Feb 1;172:3-11. doi: 10.1016/j.ymeth.2019.07.013. Epub 2019 Jul 19. Methods. 2020. PMID: 31326596 Review.
An updated evolutionary classification of CRISPR-Cas systems.
Makarova KS, Wolf YI, Alkhnbashi OS, Costa F, Shah SA, Saunders SJ, Barrangou R, Brouns SJ, Charpentier E, Haft DH, Horvath P, Moineau S, Mojica FJ, Terns RM, Terns MP, White MF, Yakunin AF, Garrett RA, van der Oost J, Backofen R, Koonin EV. Makarova KS, et al. Among authors: alkhnbashi os. Nat Rev Microbiol. 2015 Nov;13(11):722-36. doi: 10.1038/nrmicro3569. Epub 2015 Sep 28. Nat Rev Microbiol. 2015. PMID: 26411297 Free PMC article. Review.
Evolutionary classification of CRISPR-Cas systems: a burst of class 2 and derived variants.
Makarova KS, Wolf YI, Iranzo J, Shmakov SA, Alkhnbashi OS, Brouns SJJ, Charpentier E, Cheng D, Haft DH, Horvath P, Moineau S, Mojica FJM, Scott D, Shah SA, Siksnys V, Terns MP, Venclovas Č, White MF, Yakunin AF, Yan W, Zhang F, Garrett RA, Backofen R, van der Oost J, Barrangou R, Koonin EV. Makarova KS, et al. Among authors: alkhnbashi os. Nat Rev Microbiol. 2020 Feb;18(2):67-83. doi: 10.1038/s41579-019-0299-x. Epub 2019 Dec 19. Nat Rev Microbiol. 2020. PMID: 31857715 Free PMC article. Review.
CRISPR-Cas systems in multicellular cyanobacteria.
Hou S, Brenes-Álvarez M, Reimann V, Alkhnbashi OS, Backofen R, Muro-Pastor AM, Hess WR. Hou S, et al. Among authors: alkhnbashi os. RNA Biol. 2019 Apr;16(4):518-529. doi: 10.1080/15476286.2018.1493330. Epub 2018 Aug 15. RNA Biol. 2019. PMID: 29995583 Free PMC article.
CRISPRtracrRNA: robust approach for CRISPR tracrRNA detection.
Mitrofanov A, Ziemann M, Alkhnbashi OS, Hess WR, Backofen R. Mitrofanov A, et al. Among authors: alkhnbashi os. Bioinformatics. 2022 Sep 16;38(Suppl_2):ii42-ii48. doi: 10.1093/bioinformatics/btac466. Bioinformatics. 2022. PMID: 36124799 Free PMC article.
Casboundary: automated definition of integral Cas cassettes.
Padilha VA, Alkhnbashi OS, Tran VD, Shah SA, Carvalho ACPLF, Backofen R. Padilha VA, et al. Among authors: alkhnbashi os. Bioinformatics. 2021 Jun 16;37(10):1352-1359. doi: 10.1093/bioinformatics/btaa984. Bioinformatics. 2021. PMID: 33226067 Free PMC article.
CRISPRloci: comprehensive and accurate annotation of CRISPR-Cas systems.
Alkhnbashi OS, Mitrofanov A, Bonidia R, Raden M, Tran VD, Eggenhofer F, Shah SA, Öztürk E, Padilha VA, Sanches DS, de Carvalho ACPLF, Backofen R. Alkhnbashi OS, et al. Nucleic Acids Res. 2021 Jul 2;49(W1):W125-W130. doi: 10.1093/nar/gkab456. Nucleic Acids Res. 2021. PMID: 34133710 Free PMC article.
The nuts and bolts of the Haloferax CRISPR-Cas system I-B.
Maier LK, Stachler AE, Brendel J, Stoll B, Fischer S, Haas KA, Schwarz TS, Alkhnbashi OS, Sharma K, Urlaub H, Backofen R, Gophna U, Marchfelder A. Maier LK, et al. Among authors: alkhnbashi os. RNA Biol. 2019 Apr;16(4):469-480. doi: 10.1080/15476286.2018.1460994. Epub 2018 May 21. RNA Biol. 2019. PMID: 29649958 Free PMC article.
29 results